Literature DB >> 15111405

Water dynamics and dewetting transitions in the small mechanosensitive channel MscS.

Andriy Anishkin1, Sergei Sukharev.   

Abstract

The dynamics of confined water in capillaries and nanotubes suggests that gating of ion channels may involve not only changes of the pore geometry, but also transitions between water-filled and empty states in certain locations. The recently solved heptameric structure of the small mechanosensitive channel of Escherichia coli, MscS, has revealed a relatively wide (7-15 A) yet highly hydrophobic transmembrane pore. Continuum estimations based on the properties of pore surface suggest low conductance and a thermodynamic possibility of dewetting. To test the predictions we performed molecular dynamics simulations of MscS filled with flexible TIP3P water. Irrespective to the initial conditions, several independent 6-ns simulations converged to the same stable state with the pore water-filled in the wider part, but predominantly empty in the narrow hydrophobic part, displaying intermittent vapor-liquid transitions. The polar gain-of-function substitution L109S in the constriction resulted in a stable hydration of the entire pore. Steered passages of Cl(-) ions through the narrow part of the pore consistently produced partial ion dehydration and required a force of 200-400 pN to overcome an estimated barrier of 10-20 kcal/mole, implying negligibly low conductance. We conclude that the crystal structure of MscS does not represent an open state. We infer that MscS gate, which is similar to that of the nicotinic ACh receptor, involves a vapor-lock mechanism where limited changes of geometry or surface polarity can locally switch the regime between water-filled (conducting) and empty (nonconducting) states.

Entities:  

Keywords:  NASA Discipline Cell Biology; Non-NASA Center

Mesh:

Substances:

Year:  2004        PMID: 15111405      PMCID: PMC1304157          DOI: 10.1016/S0006-3495(04)74340-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  45 in total

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2.  Open channel structure of MscL and the gating mechanism of mechanosensitive channels.

Authors:  Eduardo Perozo; D Marien Cortes; Pornthep Sompornpisut; Anna Kloda; Boris Martinac
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

3.  Domain organization of the MscS mechanosensitive channel of Escherichia coli.

Authors:  Samantha Miller; Wendy Bartlett; Subramanian Chandrasekaran; Sally Simpson; Michelle Edwards; Ian R Booth
Journal:  EMBO J       Date:  2003-01-02       Impact factor: 11.598

4.  Time-correlation analysis of simulated water motion in flexible and rigid gramicidin channels.

Authors:  S W Chiu; E Jakobsson; S Subramaniam; J A McCammon
Journal:  Biophys J       Date:  1991-07       Impact factor: 4.033

5.  Atomic solvation parameters applied to molecular dynamics of proteins in solution.

Authors:  L Wesson; D Eisenberg
Journal:  Protein Sci       Date:  1992-02       Impact factor: 6.725

6.  Pressure-sensitive ion channel in Escherichia coli.

Authors:  B Martinac; M Buechner; A H Delcour; J Adler; C Kung
Journal:  Proc Natl Acad Sci U S A       Date:  1987-04       Impact factor: 11.205

7.  Molecular dynamics of the KcsA K(+) channel in a bilayer membrane.

Authors:  S Bernèche; B Roux
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

Review 8.  Two families of mechanosensitive channel proteins.

Authors:  Christopher D Pivetti; Ming-Ren Yen; Samantha Miller; Wolfgang Busch; Yi-Hsiung Tseng; Ian R Booth; Milton H Saier
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

9.  Acetylcholine receptor channel imaged in the open state.

Authors:  N Unwin
Journal:  Nature       Date:  1995-01-05       Impact factor: 49.962

Review 10.  Progress and prospects in permeation.

Authors:  W Nonner; D P Chen; B Eisenberg
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

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  104 in total

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Authors:  Ian R Booth; Paul Blount
Journal:  J Bacteriol       Date:  2012-06-08       Impact factor: 3.490

Review 2.  Structures of membrane proteins.

Authors:  Kutti R Vinothkumar; Richard Henderson
Journal:  Q Rev Biophys       Date:  2010-02       Impact factor: 5.318

3.  Principles of conduction and hydrophobic gating in K+ channels.

Authors:  Morten Ø Jensen; David W Borhani; Kresten Lindorff-Larsen; Paul Maragakis; Vishwanath Jogini; Michael P Eastwood; Ron O Dror; David E Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

4.  Genetic screen for potassium leaky small mechanosensitive channels (MscS) in Escherichia coli: recognition of cytoplasmic β domain as a new gating element.

Authors:  Piotr Koprowski; Wojciech Grajkowski; Ehud Y Isacoff; Andrzej Kubalski
Journal:  J Biol Chem       Date:  2010-10-26       Impact factor: 5.157

5.  Pore opening and closing of a pentameric ligand-gated ion channel.

Authors:  Fangqiang Zhu; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

Review 6.  Mechanosensitive channels: what can they do and how do they do it?

Authors:  Elizabeth S Haswell; Rob Phillips; Douglas C Rees
Journal:  Structure       Date:  2011-10-12       Impact factor: 5.006

7.  Surface changes of the mechanosensitive channel MscS upon its activation, inactivation, and closing.

Authors:  Wojciech Grajkowski; Andrzej Kubalski; Piotr Koprowski
Journal:  Biophys J       Date:  2005-01-21       Impact factor: 4.033

8.  Explicit channel conductance: can it be computed?

Authors:  Andriy Anishkin; Sergei Sukharev
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

9.  Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

10.  Molecular dynamics study of gating in the mechanosensitive channel of small conductance MscS.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

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