Literature DB >> 28745933

Does eIF3 promote reinitiation after translation of short upstream ORFs also in mammalian cells?

Vladislava Hronová1,2, Mahabub Pasha Mohammad1, Susan Wagner1, Josef Pánek3, Stanislava Gunišová1, Jakub Zeman1, Kristýna Poncová1, Leoš Shivaya Valášek1.   

Abstract

Reinitiation after translation of short upstream ORFs (uORFs) represents one of the means of regulation of gene expression on the mRNA-specific level in response to changing environmental conditions. Over the years it has been shown-mainly in budding yeast-that its efficiency depends on cis-acting features occurring in sequences flanking reinitiation-permissive uORFs, the nature of their coding sequences, as well as protein factors acting in trans. We earlier demonstrated that the first two uORFs from the reinitiation-regulated yeast GCN4 mRNA leader carry specific structural elements in their 5' sequences that interact with the translation initiation factor eIF3 to prevent full ribosomal recycling post their translation. Actually, this interaction turned out to be instrumental in stabilizing the mRNA·40S post-termination complex, which is thus capable to eventually resume scanning and reinitiate on the next AUG start site downstream. Recently, we also provided important in vivo evidence strongly supporting the long-standing idea that to stimulate reinitiation, eIF3 has to remain bound to ribosomes elongating these uORFs until their stop codon has been reached. Here we examined the importance of eIF3 and sequences flanking uORF1 of the human functional homolog of yeast GCN4, ATF4, in stimulation of efficient reinitiation. We revealed that the molecular basis of the reinitiation mechanism is conserved between yeasts and humans.

Entities:  

Keywords:  ATF4; GCN4; eIF3; mRNA; reinitiation; ribosome; translational control

Mesh:

Substances:

Year:  2017        PMID: 28745933      PMCID: PMC5731805          DOI: 10.1080/15476286.2017.1353863

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  47 in total

1.  RNA secondary structure analysis using the Vienna RNA package.

Authors:  Ivo L Hofacker
Journal:  Curr Protoc Bioinformatics       Date:  2004-02

Review 2.  The regulatory potential of upstream open reading frames in eukaryotic gene expression.

Authors:  Klaus Wethmar
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-07-03       Impact factor: 9.957

3.  Multiple upstream AUG codons mediate translational control of GCN4.

Authors:  P P Mueller; A G Hinnebusch
Journal:  Cell       Date:  1986-04-25       Impact factor: 41.582

4.  Effect of sequence context at stop codons on efficiency of reinitiation in GCN4 translational control.

Authors:  C M Grant; A G Hinnebusch
Journal:  Mol Cell Biol       Date:  1994-01       Impact factor: 4.272

5.  Activities of Ligatin and MCT-1/DENR in eukaryotic translation initiation and ribosomal recycling.

Authors:  Maxim A Skabkin; Olga V Skabkina; Vidya Dhote; Anton A Komar; Christopher U T Hellen; Tatyana V Pestova
Journal:  Genes Dev       Date:  2010-08-15       Impact factor: 11.361

6.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

Review 7.  ABCE1: A special factor that orchestrates translation at the crossroad between recycling and initiation.

Authors:  Eder Mancera-Martínez; Jailson Brito Querido; Leos Shivaya Valasek; Angelita Simonetti; Yaser Hashem
Journal:  RNA Biol       Date:  2017-05-12       Impact factor: 4.652

8.  In vivo evidence that eIF3 stays bound to ribosomes elongating and terminating on short upstream ORFs to promote reinitiation.

Authors:  Mahabub Pasha Mohammad; Vanda Munzarová Pondelícková; Jakub Zeman; Stanislava Gunišová; Leoš Shivaya Valášek
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

9.  Evolution of alternative and constitutive regions of mammalian 5'UTRs.

Authors:  Alissa M Resch; Aleksey Y Ogurtsov; Igor B Rogozin; Svetlana A Shabalina; Eugene V Koonin
Journal:  BMC Genomics       Date:  2009-04-16       Impact factor: 3.969

10.  Small ribosomal protein RPS0 stimulates translation initiation by mediating 40S-binding of eIF3 via its direct contact with the eIF3a/TIF32 subunit.

Authors:  Tomáš Kouba; István Dányi; Stanislava Gunišová; Vanda Munzarová; Vladislava Vlčková; Lucie Cuchalová; Andreas Neueder; Philipp Milkereit; Leoš Shivaya Valášek
Journal:  PLoS One       Date:  2012-07-05       Impact factor: 3.240

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  12 in total

Review 1.  uORF-mediated translational control: recently elucidated mechanisms and implications in cancer.

Authors:  Hung-Hsi Chen; Woan-Yuh Tarn
Journal:  RNA Biol       Date:  2019-06-24       Impact factor: 4.652

2.  Rebirth of the translational machinery: The importance of recycling ribosomes.

Authors:  David J Young; Nicholas R Guydosh
Journal:  Bioessays       Date:  2022-02-11       Impact factor: 4.653

3.  Dynamic eIF3a O-GlcNAcylation controls translation reinitiation during nutrient stress.

Authors:  Xin Erica Shu; Yuanhui Mao; Longfei Jia; Shu-Bing Qian
Journal:  Nat Chem Biol       Date:  2021-12-09       Impact factor: 16.174

Review 4.  Translation acrobatics: how cancer cells exploit alternate modes of translational initiation.

Authors:  Ashwin Sriram; Jonathan Bohlen; Aurelio A Teleman
Journal:  EMBO Rep       Date:  2018-09-17       Impact factor: 8.807

5.  Fluorescently-tagged human eIF3 for single-molecule spectroscopy.

Authors:  Alex G Johnson; Alexey N Petrov; Gabriele Fuchs; Karim Majzoub; Rosslyn Grosely; Junhong Choi; Joseph D Puglisi
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

Review 6.  Please do not recycle! Translation reinitiation in microbes and higher eukaryotes.

Authors:  Stanislava Gunišová; Vladislava Hronová; Mahabub Pasha Mohammad; Alan G Hinnebusch; Leoš Shivaya Valášek
Journal:  FEMS Microbiol Rev       Date:  2018-03-01       Impact factor: 16.408

Review 7.  Control of Translation at the Initiation Phase During Glucose Starvation in Yeast.

Authors:  Yoshika Janapala; Thomas Preiss; Nikolay E Shirokikh
Journal:  Int J Mol Sci       Date:  2019-08-19       Impact factor: 5.923

8.  Selective Translation Complex Profiling Reveals Staged Initiation and Co-translational Assembly of Initiation Factor Complexes.

Authors:  Susan Wagner; Anna Herrmannová; Vladislava Hronová; Stanislava Gunišová; Neelam D Sen; Ross D Hannan; Alan G Hinnebusch; Nikolay E Shirokikh; Thomas Preiss; Leoš Shivaya Valášek
Journal:  Mol Cell       Date:  2020-06-25       Impact factor: 17.970

9.  Embraced by eIF3: structural and functional insights into the roles of eIF3 across the translation cycle.

Authors:  Leoš Shivaya Valášek; Jakub Zeman; Susan Wagner; Petra Beznosková; Zuzana Pavlíková; Mahabub Pasha Mohammad; Vladislava Hronová; Anna Herrmannová; Yaser Hashem; Stanislava Gunišová
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

10.  Engineered transient and stable overexpression of translation factors eIF3i and eIF3c in CHOK1 and HEK293 cells gives enhanced cell growth associated with increased c-Myc expression and increased recombinant protein synthesis.

Authors:  Anne Roobol; Joanne Roobol; Matthew E Smith; Martin J Carden; John W B Hershey; Anne E Willis; C Mark Smales
Journal:  Metab Eng       Date:  2020-02-13       Impact factor: 9.783

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