Literature DB >> 17315992

The dynamics of water-protein interaction studied by ultrafast optical Kerr-effect spectroscopy.

Neil T Hunt1, Lisa Kattner, Richard P Shanks, Klaas Wynne.   

Abstract

Changes in the ultrafast dynamics and terahertz Raman spectrum accompanying a helix-to-coil transition of a homo-polypeptide have been observed for the first time. Formation of the alpha-helix is associated with a shift to lower frequency of a broad Raman band attributable to solvent-peptide intermolecular hydrogen bonding. This band facilitates direct spectroscopic observation of so-called hydration water near a peptide and yields the first quantitative estimate of the time scale of the ultrafast dynamics in the solvation shell, which range from 0.18 to 0.33 ps (185-100 cm(-1)) depending on the secondary structure of the peptide. Such fast motions of solvent molecules have been referred to as the "lubricant of life" and are thought to play key roles in determining structure and activity of proteins.

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Year:  2007        PMID: 17315992     DOI: 10.1021/ja066289n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Minimizing frustration by folding in an aqueous environment.

Authors:  Carla Mattos; A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

2.  Two-dimensional Raman-terahertz spectroscopy of water.

Authors:  Janne Savolainen; Saima Ahmed; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

3.  Implementing electrostatic polarization cannot fill the gap between experimental and theoretical measurements for the ultrafast fluorescence decay of myoglobin.

Authors:  Bingbing Lin; Ya Gao; Yongxiu Li; John Z H Zhang; Ye Mei
Journal:  J Mol Model       Date:  2014-03-27       Impact factor: 1.810

4.  Correlated structural kinetics and retarded solvent dynamics at the metalloprotease active site.

Authors:  Moran Grossman; Benjamin Born; Matthias Heyden; Dmitry Tworowski; Gregg B Fields; Irit Sagi; Martina Havenith
Journal:  Nat Struct Mol Biol       Date:  2011-09-18       Impact factor: 15.369

5.  Water lubricates hydrogen-bonded molecular machines.

Authors:  Matthijs R Panman; Bert H Bakker; David den Uyl; Euan R Kay; David A Leigh; Wybren Jan Buma; Albert M Brouwer; Jan A J Geenevasen; Sander Woutersen
Journal:  Nat Chem       Date:  2013-09-01       Impact factor: 24.427

6.  Crowding induced collective hydration of biological macromolecules over extended distances.

Authors:  John T King; Evan J Arthur; Charles L Brooks; Kevin J Kubarych
Journal:  J Am Chem Soc       Date:  2013-12-16       Impact factor: 15.419

Review 7.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

8.  High-resolution crystal structures of protein helices reconciled with three-centered hydrogen bonds and multipole electrostatics.

Authors:  Daniel J Kuster; Chengyu Liu; Zheng Fang; Jay W Ponder; Garland R Marshall
Journal:  PLoS One       Date:  2015-04-20       Impact factor: 3.240

9.  Observation of coherent delocalized phonon-like modes in DNA under physiological conditions.

Authors:  Mario González-Jiménez; Gopakumar Ramakrishnan; Thomas Harwood; Adrian J Lapthorn; Sharon M Kelly; Elizabeth M Ellis; Klaas Wynne
Journal:  Nat Commun       Date:  2016-06-01       Impact factor: 14.919

10.  Ultrafast infrared spectroscopy reveals water-mediated coherent dynamics in an enzyme active site.

Authors:  Katrin Adamczyk; Niall Simpson; Gregory M Greetham; Andrea Gumiero; Martin A Walsh; Michael Towrie; Anthony W Parker; Neil T Hunt
Journal:  Chem Sci       Date:  2014-10-22       Impact factor: 9.825

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