Literature DB >> 30059834

Upgrading aminoacyl-tRNA synthetases for genetic code expansion.

Oscar Vargas-Rodriguez1, Anastasia Sevostyanova2, Dieter Söll3, Ana Crnković4.   

Abstract

Synthesis of proteins with non-canonical amino acids via genetic code expansion is at the forefront of synthetic biology. Progress in this field has enabled site-specific incorporation of over 200 chemically and structurally diverse amino acids into proteins in an increasing number of organisms. This has been facilitated by our ability to repurpose aminoacyl-tRNA synthetases to attach non-canonical amino acids to engineered tRNAs. Current efforts in the field focus on overcoming existing limitations to the simultaneous incorporation of multiple non-canonical amino acids or amino acids that differ from the l-α-amino acid structure (e.g. d-amino acid or β-amino acid). Here, we summarize the progress and challenges in developing more selective and efficient aminoacyl-tRNA synthetases for genetic code expansion.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 30059834      PMCID: PMC6214156          DOI: 10.1016/j.cbpa.2018.07.014

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  81 in total

1.  New methods enabling efficient incorporation of unnatural amino acids in yeast.

Authors:  Qian Wang; Lei Wang
Journal:  J Am Chem Soc       Date:  2008-04-22       Impact factor: 15.419

Review 2.  Universal rules and idiosyncratic features in tRNA identity.

Authors:  R Giegé; M Sissler; C Florentz
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

3.  Expanding the genetic code of Escherichia coli with phosphoserine.

Authors:  Hee-Sung Park; Michael J Hohn; Takuya Umehara; Li-Tao Guo; Edith M Osborne; Jack Benner; Christopher J Noren; Jesse Rinehart; Dieter Söll
Journal:  Science       Date:  2011-08-26       Impact factor: 47.728

4.  Functional Replacement of Histidine in Proteins To Generate Noncanonical Amino Acid Dependent Organisms.

Authors:  Fei Gan; Renhe Liu; Feng Wang; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2018-03-12       Impact factor: 15.419

5.  Rational design of an orthogonal tryptophanyl nonsense suppressor tRNA.

Authors:  Randall A Hughes; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2010-06-22       Impact factor: 16.971

6.  Exploring the substrate range of wild-type aminoacyl-tRNA synthetases.

Authors:  Chenguang Fan; Joanne M L Ho; Napon Chirathivat; Dieter Söll; Yane-Shih Wang
Journal:  Chembiochem       Date:  2014-05-30       Impact factor: 3.164

7.  Expanding the Scope of Single- and Double-Noncanonical Amino Acid Mutagenesis in Mammalian Cells Using Orthogonal Polyspecific Leucyl-tRNA Synthetases.

Authors:  Yunan Zheng; Raja Mukherjee; Melissa A Chin; Peter Igo; Martin J Gilgenast; Abhishek Chatterjee
Journal:  Biochemistry       Date:  2017-11-15       Impact factor: 3.162

8.  Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing.

Authors:  Michael Shaofei Zhang; Simon F Brunner; Nicolas Huguenin-Dezot; Alexandria D Liang; Wolfgang H Schmied; Daniel T Rogerson; Jason W Chin
Journal:  Nat Methods       Date:  2017-05-29       Impact factor: 28.547

Review 9.  Designing logical codon reassignment - Expanding the chemistry in biology.

Authors:  Anaëlle Dumas; Lukas Lercher; Christopher D Spicer; Benjamin G Davis
Journal:  Chem Sci       Date:  2014-07-14       Impact factor: 9.825

10.  Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair.

Authors:  Susan M Hancock; Rajendra Uprety; Alexander Deiters; Jason W Chin
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

View more
  26 in total

Review 1.  Future prospects for noncanonical amino acids in biological therapeutics.

Authors:  Arlinda Rezhdo; Mariha Islam; Manjie Huang; James A Van Deventer
Journal:  Curr Opin Biotechnol       Date:  2019-04-08       Impact factor: 9.740

Review 2.  Incorporation of nonstandard amino acids into proteins: principles and applications.

Authors:  Tianwen Wang; Chen Liang; Hongjv Xu; Yafei An; Sha Xiao; Mengyuan Zheng; Lu Liu; Lei Nie
Journal:  World J Microbiol Biotechnol       Date:  2020-04-08       Impact factor: 3.312

3.  Mutually Orthogonal Nonsense-Suppression Systems and Conjugation Chemistries for Precise Protein Labeling at up to Three Distinct Sites.

Authors:  James S Italia; Partha Sarathi Addy; Sarah B Erickson; Jennifer C Peeler; Eranthie Weerapana; Abhishek Chatterjee
Journal:  J Am Chem Soc       Date:  2019-04-08       Impact factor: 15.419

Review 4.  Incorporation of non-standard amino acids into proteins: challenges, recent achievements, and emerging applications.

Authors:  Xing Jin; Oh-Jin Park; Seok Hoon Hong
Journal:  Appl Microbiol Biotechnol       Date:  2019-02-21       Impact factor: 4.813

5.  Reporter system architecture affects measurements of noncanonical amino acid incorporation efficiency and fidelity.

Authors:  K A Potts; J T Stieglitz; M Lei; J A Van Deventer
Journal:  Mol Syst Des Eng       Date:  2020-01-23

Review 6.  Recent advancements in enzyme engineering via site-specific incorporation of unnatural amino acids.

Authors:  Hang-Qin Zhu; Xiao-Ling Tang; Ren-Chao Zheng; Yu-Guo Zheng
Journal:  World J Microbiol Biotechnol       Date:  2021-11-06       Impact factor: 3.312

7.  Photocatalytic Reductive Olefin Hydrodifluoroalkylation Enabled by Tertiary Amine Reductants Compatible with Complex Systems.

Authors:  Jonathan D Ellefsen; Scott J Miller
Journal:  J Org Chem       Date:  2022-07-13       Impact factor: 4.198

8.  Amber codon is genetically unstable in generation of premature termination codon (PTC)-harbouring Foot-and-mouth disease virus (FMDV) via genetic code expansion.

Authors:  Rongzeng Hao; Kun Ma; Yi Ru; Dan Li; Gaoyuan Song; Bingzhou Lu; Huanan Liu; Yajun Li; Jiaoyan Zhang; Chunping Wu; Guicai Zhang; Haitao Hu; Jianxun Luo; Haixue Zheng
Journal:  RNA Biol       Date:  2021-04-14       Impact factor: 4.652

9.  In vitro-Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins.

Authors:  Yi Liu; Roderick G Davis; Paul M Thomas; Neil L Kelleher; Michael C Jewett
Journal:  Biochemistry       Date:  2021-01-11       Impact factor: 3.162

10.  Structural Robustness Affects the Engineerability of Aminoacyl-tRNA Synthetases for Genetic Code Expansion.

Authors:  Katherine T Grasso; Megan J R Yeo; Christen M Hillenbrand; Elise D Ficaretta; James S Italia; Rachel L Huang; Abhishek Chatterjee
Journal:  Biochemistry       Date:  2021-02-09       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.