Literature DB >> 28008064

A three-dimensional movie of structural changes in bacteriorhodopsin.

Eriko Nango1,2, Antoine Royant3,4, Minoru Kubo1,5, Takanori Nakane6, Cecilia Wickstrand7, Tetsunari Kimura1,8, Tomoyuki Tanaka1, Kensuke Tono9, Changyong Song1,10, Rie Tanaka1, Toshi Arima1, Ayumi Yamashita1, Jun Kobayashi1, Toshiaki Hosaka11, Eiichi Mizohata12, Przemyslaw Nogly13, Michihiro Sugahara1, Daewoong Nam10, Takashi Nomura1, Tatsuro Shimamura2, Dohyun Im2, Takaaki Fujiwara2, Yasuaki Yamanaka2, Byeonghyun Jeon10, Tomohiro Nishizawa5,6, Kazumasa Oda6, Masahiro Fukuda6, Rebecka Andersson7, Petra Båth7, Robert Dods7, Jan Davidsson14, Shigeru Matsuoka15, Satoshi Kawatake15, Michio Murata15, Osamu Nureki6, Shigeki Owada1, Takashi Kameshima9, Takaki Hatsui1, Yasumasa Joti9, Gebhard Schertler13,16, Makina Yabashi1, Ana-Nicoleta Bondar17, Jörg Standfuss13, Richard Neutze18, So Iwata19,2.   

Abstract

Bacteriorhodopsin (bR) is a light-driven proton pump and a model membrane transport protein. We used time-resolved serial femtosecond crystallography at an x-ray free electron laser to visualize conformational changes in bR from nanoseconds to milliseconds following photoactivation. An initially twisted retinal chromophore displaces a conserved tryptophan residue of transmembrane helix F on the cytoplasmic side of the protein while dislodging a key water molecule on the extracellular side. The resulting cascade of structural changes throughout the protein shows how motions are choreographed as bR transports protons uphill against a transmembrane concentration gradient.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 28008064     DOI: 10.1126/science.aah3497

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  108 in total

Review 1.  A Bright Future for Serial Femtosecond Crystallography with XFELs.

Authors:  Linda C Johansson; Benjamin Stauch; Andrii Ishchenko; Vadim Cherezov
Journal:  Trends Biochem Sci       Date:  2017-07-18       Impact factor: 13.807

2.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

3.  Diversity, Mechanism, and Optogenetic Application of Light-Driven Ion Pump Rhodopsins.

Authors:  Keiichi Inoue
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

4.  Structure-Function Relationship of Channelrhodopsins.

Authors:  Hideaki E Kato
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

5.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

Review 6.  New approaches towards the understanding of integral membrane proteins: A structural perspective on G protein-coupled receptors.

Authors:  Reinhard Grisshammer
Journal:  Protein Sci       Date:  2017-06-07       Impact factor: 6.725

Review 7.  Coherent phenomena in photosynthetic light harvesting: part two-observations in biological systems.

Authors:  Harry W Rathbone; Jeffery A Davis; Katharine A Michie; Sophia C Goodchild; Neil O Robertson; Paul M G Curmi
Journal:  Biophys Rev       Date:  2018-09-22

8.  Experimental evaluation of the generalized vibrational theory of G protein-coupled receptor activation.

Authors:  Ross D Hoehn; David E Nichols; John D McCorvy; Hartmut Neven; Sabre Kais
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-12       Impact factor: 11.205

Review 9.  Structural biology of G protein-coupled receptors: new opportunities from XFELs and cryoEM.

Authors:  Andrii Ishchenko; Cornelius Gati; Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2018-03-16       Impact factor: 6.809

Review 10.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

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