Literature DB >> 33950392

Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Pierre Aller1, Allen M Orville2.   

Abstract

Macromolecular crystallography (MX) leverages the methods of physics and the language of chemistry to reveal fundamental insights into biology. Often beautifully artistic images present MX results to support profound functional hypotheses that are vital to entire life science research community. Over the past several decades, synchrotrons around the world have been the workhorses for X-ray diffraction data collection at many highly automated beamlines. The newest tools include X-ray-free electron lasers (XFELs) located at facilities in the USA, Japan, Korea, Switzerland, and Germany that deliver about nine orders of magnitude higher brightness in discrete femtosecond long pulses. At each of these facilities, new serial femtosecond crystallography (SFX) strategies exploit slurries of micron-size crystals by rapidly delivering individual crystals into the XFEL X-ray interaction region, from which one diffraction pattern is collected per crystal before it is destroyed by the intense X-ray pulse. Relatively simple adaptions to SFX methods produce time-resolved data collection strategies wherein reactions are triggered by visible light illumination or by chemical diffusion/mixing. Thus, XFELs provide new opportunities for high temporal and spatial resolution studies of systems engaged in function at physiological temperature. In this chapter, we summarize various issues related to microcrystal slurry preparation, sample delivery into the X-ray interaction region, and some emerging strategies for time-resolved SFX data collection.

Keywords:  Metalloenzymes; Microcrystal slurry; Serial femtosecond crystallography (SFX); Time-resolved macromolecular crystallography; X-ray emission spectroscopy (XES); X-ray-free electron laser (XFEL )

Year:  2021        PMID: 33950392     DOI: 10.1007/978-1-0716-1406-8_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  183 in total

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Authors:  Henry N Chapman
Journal:  Annu Rev Biochem       Date:  2019-01-02       Impact factor: 23.643

Review 3.  Real-time crystallographic studies of the adenine riboswitch using an X-ray free-electron laser.

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4.  Topological Structure Determination of RNA Using Small-Angle X-Ray Scattering.

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Journal:  J Mol Biol       Date:  2017-09-14       Impact factor: 5.469

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Authors:  David S Goodsell; Christine Zardecki; Luigi Di Costanzo; Jose M Duarte; Brian P Hudson; Irina Persikova; Joan Segura; Chenghua Shao; Maria Voigt; John D Westbrook; Jasmine Y Young; Stephen K Burley
Journal:  Protein Sci       Date:  2019-11-29       Impact factor: 6.725

8.  XFELs open a new era in structural chemical biology.

Authors:  Petra Fromme
Journal:  Nat Chem Biol       Date:  2015-12       Impact factor: 15.040

9.  Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.

Authors:  J R Stagno; Y Liu; Y R Bhandari; C E Conrad; S Panja; M Swain; L Fan; G Nelson; C Li; D R Wendel; T A White; J D Coe; M O Wiedorn; J Knoska; D Oberthuer; R A Tuckey; P Yu; M Dyba; S G Tarasov; U Weierstall; T D Grant; C D Schwieters; J Zhang; A R Ferré-D'Amaré; P Fromme; D E Draper; M Liang; M S Hunter; S Boutet; K Tan; X Zuo; X Ji; A Barty; N A Zatsepin; H N Chapman; J C H Spence; S A Woodson; Y-X Wang
Journal:  Nature       Date:  2016-11-14       Impact factor: 49.962

Review 10.  The archiving and dissemination of biological structure data.

Authors:  Helen M Berman; Stephen K Burley; Gerard J Kleywegt; John L Markley; Haruki Nakamura; Sameer Velankar
Journal:  Curr Opin Struct Biol       Date:  2016-07-21       Impact factor: 6.809

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