Literature DB >> 33398806

Structure-Function Relationship of Channelrhodopsins.

Hideaki E Kato1.   

Abstract

Ion-translocating rhodopsins, especially channelrhodopsins (ChRs), have attracted broad attention as a powerful tool to modulate the membrane potential of cells with light (optogenetics). Because of recent biophysical, spectroscopic, and computational studies, including the structural determination of cation and anion ChRs, our understanding of the molecular mechanism underlying light-gated ion conduction has been greatly advanced. In this chapter, I first describe the background of rhodopsin family proteins including ChR, and how the optogenetics technology has been established from the discovery of first ChR in 2002. I later introduce the recent findings of the structure-function relationship of ChR by comparing the crystal structures of cation and anion ChRs. I further discuss the future goal in the fields of ChR research and optogenetic tool development.

Keywords:  Channelrhodopsin; Optogenetics; Structural biology; Structure-guided engineering; Structure-guided mining

Year:  2021        PMID: 33398806     DOI: 10.1007/978-981-15-8763-4_3

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  92 in total

1.  Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.

Authors:  Andre Berndt; Soo Yeun Lee; Jonas Wietek; Charu Ramakrishnan; Elizabeth E Steinberg; Asim J Rashid; Hoseok Kim; Sungmo Park; Adam Santoro; Paul W Frankland; Shrivats M Iyer; Sally Pak; Sofie Ährlund-Richter; Scott L Delp; Robert C Malenka; Sheena A Josselyn; Marie Carlén; Peter Hegemann; Karl Deisseroth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

2.  Millisecond-timescale, genetically targeted optical control of neural activity.

Authors:  Edward S Boyden; Feng Zhang; Ernst Bamberg; Georg Nagel; Karl Deisseroth
Journal:  Nat Neurosci       Date:  2005-08-14       Impact factor: 24.884

3.  Bi-stable neural state switches.

Authors:  André Berndt; Ofer Yizhar; Lisa A Gunaydin; Peter Hegemann; Karl Deisseroth
Journal:  Nat Neurosci       Date:  2008-12-08       Impact factor: 24.884

4.  High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels.

Authors:  André Berndt; Philipp Schoenenberger; Joanna Mattis; Kay M Tye; Karl Deisseroth; Peter Hegemann; Thomas G Oertner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-19       Impact factor: 11.205

5.  Identification of a third rhodopsin-like pigment in phototactic Halobacterium halobium.

Authors:  R A Bogomolni; J L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  1982-10       Impact factor: 11.205

6.  Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration.

Authors:  Anding Bi; Jinjuan Cui; Yu-Ping Ma; Elena Olshevskaya; Mingliang Pu; Alexander M Dizhoor; Zhuo-Hua Pan
Journal:  Neuron       Date:  2006-04-06       Impact factor: 17.173

7.  Neural substrates of awakening probed with optogenetic control of hypocretin neurons.

Authors:  Antoine R Adamantidis; Feng Zhang; Alexander M Aravanis; Karl Deisseroth; Luis de Lecea
Journal:  Nature       Date:  2007-10-17       Impact factor: 49.962

8.  Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization.

Authors:  Peter Berthold; Satoshi P Tsunoda; Oliver P Ernst; Wolfgang Mages; Dietrich Gradmann; Peter Hegemann
Journal:  Plant Cell       Date:  2008-06-13       Impact factor: 11.277

9.  Structure-guided transformation of channelrhodopsin into a light-activated chloride channel.

Authors:  Andre Berndt; Soo Yeun Lee; Charu Ramakrishnan; Karl Deisseroth
Journal:  Science       Date:  2014-04-25       Impact factor: 47.728

10.  Retinal isomerization and water-pore formation in channelrhodopsin-2.

Authors:  Albert Ardevol; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-19       Impact factor: 11.205

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  5 in total

1.  Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine.

Authors:  Koichiro E Kishi; Yoon Seok Kim; Masahiro Fukuda; Masatoshi Inoue; Tsukasa Kusakizako; Peter Y Wang; Charu Ramakrishnan; Eamon F X Byrne; Elina Thadhani; Joseph M Paggi; Toshiki E Matsui; Keitaro Yamashita; Takashi Nagata; Masae Konno; Sean Quirin; Maisie Lo; Tyler Benster; Tomoko Uemura; Kehong Liu; Mikihiro Shibata; Norimichi Nomura; So Iwata; Osamu Nureki; Ron O Dror; Keiichi Inoue; Karl Deisseroth; Hideaki E Kato
Journal:  Cell       Date:  2022-02-02       Impact factor: 66.850

Review 2.  Towards the Idea of Molecular Brains.

Authors:  Youri Timsit; Sergeant-Perthuis Grégoire
Journal:  Int J Mol Sci       Date:  2021-11-01       Impact factor: 5.923

3.  Engineered Bacteriorhodopsin May Induce Lung Cancer Cell Cycle Arrest and Suppress Their Proliferation and Migration.

Authors:  Chui-Wei Wong; Ling-Ning Ko; Hung-Jin Huang; Chii-Shen Yang; Shan-Hui Hsu
Journal:  Molecules       Date:  2021-12-03       Impact factor: 4.411

Review 4.  Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective.

Authors:  Youri Timsit; Magali Lescot; Martha Valiadi; Fabrice Not
Journal:  Int J Mol Sci       Date:  2021-10-20       Impact factor: 5.923

5.  Cryo-EM structures of the channelrhodopsin ChRmine in lipid nanodiscs.

Authors:  Kyle Tucker; Savitha Sridharan; Hillel Adesnik; Stephen G Brohawn
Journal:  Nat Commun       Date:  2022-08-17       Impact factor: 17.694

  5 in total

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