Literature DB >> 29543504

Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Benjamin Stauch1, Vadim Cherezov1.   

Abstract

G protein-coupled receptors (GPCRs) represent a large superfamily of membrane proteins that mediate cell signaling and regulate a variety of physiological processes in the human body. Structure-function studies of this superfamily were enabled a decade ago by multiple breakthroughs in technology that included receptor stabilization, crystallization in a membrane environment, and microcrystallography. The recent emergence of X-ray free-electron lasers (XFELs) has further accelerated structural studies of GPCRs and other challenging proteins by overcoming radiation damage and providing access to high-resolution structures and dynamics using micrometer-sized crystals. Here, we summarize key technology advancements and major milestones of GPCR research using XFELs and provide a brief outlook on future developments in the field.

Entities:  

Keywords:  G protein–coupled receptor; X-ray free-electron laser; lipidic cubic phase; serial femtosecond crystallography; structure-function

Mesh:

Substances:

Year:  2018        PMID: 29543504      PMCID: PMC6290114          DOI: 10.1146/annurev-biophys-070317-033239

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  106 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

3.  Rational design of lipid for membrane protein crystallization.

Authors:  Yohann Misquitta; Vadim Cherezov; Fabien Havas; Suzanne Patterson; Jakkam M Mohan; Angela J Wells; David J Hart; Martin Caffrey
Journal:  J Struct Biol       Date:  2004-11       Impact factor: 2.867

Review 4.  An overview of the diverse roles of G-protein coupled receptors (GPCRs) in the pathophysiology of various human diseases.

Authors:  Boon Chin Heng; Dominique Aubel; Martin Fussenegger
Journal:  Biotechnol Adv       Date:  2013-08-30       Impact factor: 14.227

5.  The importance of ligands for G protein-coupled receptor stability.

Authors:  Xianjun Zhang; Raymond C Stevens; Fei Xu
Journal:  Trends Biochem Sci       Date:  2015-01-15       Impact factor: 13.807

Review 6.  Successful Strategies to Determine High-Resolution Structures of GPCRs.

Authors:  Jin Xiang; Eugene Chun; Chang Liu; Liang Jing; Zina Al-Sahouri; Lan Zhu; Wei Liu
Journal:  Trends Pharmacol Sci       Date:  2016-10-07       Impact factor: 14.819

7.  Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.

Authors:  Kanupriya Pande; Christopher D M Hutchison; Gerrit Groenhof; Andy Aquila; Josef S Robinson; Jason Tenboer; Shibom Basu; Sébastien Boutet; Daniel P DePonte; Mengning Liang; Thomas A White; Nadia A Zatsepin; Oleksandr Yefanov; Dmitry Morozov; Dominik Oberthuer; Cornelius Gati; Ganesh Subramanian; Daniel James; Yun Zhao; Jake Koralek; Jennifer Brayshaw; Christopher Kupitz; Chelsie Conrad; Shatabdi Roy-Chowdhury; Jesse D Coe; Markus Metz; Paulraj Lourdu Xavier; Thomas D Grant; Jason E Koglin; Gihan Ketawala; Raimund Fromme; Vukica Šrajer; Robert Henning; John C H Spence; Abbas Ourmazd; Peter Schwander; Uwe Weierstall; Matthias Frank; Petra Fromme; Anton Barty; Henry N Chapman; Keith Moffat; Jasper J van Thor; Marius Schmidt
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

8.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 9.  Structural Studies of G Protein-Coupled Receptors.

Authors:  Dandan Zhang; Qiang Zhao; Beili Wu
Journal:  Mol Cells       Date:  2015-10-15       Impact factor: 5.034

10.  Recent developments in CrystFEL.

Authors:  Thomas A White; Valerio Mariani; Wolfgang Brehm; Oleksandr Yefanov; Anton Barty; Kenneth R Beyerlein; Fedor Chervinskii; Lorenzo Galli; Cornelius Gati; Takanori Nakane; Alexandra Tolstikova; Keitaro Yamashita; Chun Hong Yoon; Kay Diederichs; Henry N Chapman
Journal:  J Appl Crystallogr       Date:  2016-03-29       Impact factor: 3.304

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  17 in total

Review 1.  Serial Crystallography for Structure-Based Drug Discovery.

Authors:  Lan Zhu; Xiaoyu Chen; Enrique E Abola; Liang Jing; Wei Liu
Journal:  Trends Pharmacol Sci       Date:  2020-09-16       Impact factor: 14.819

Review 2.  An outlook on using serial femtosecond crystallography in drug discovery.

Authors:  Alexey Mishin; Anastasiia Gusach; Aleksandra Luginina; Egor Marin; Valentin Borshchevskiy; Vadim Cherezov
Journal:  Expert Opin Drug Discov       Date:  2019-06-11       Impact factor: 6.098

3.  Co-flow injection for serial crystallography at X-ray free-electron lasers.

Authors:  Diandra Doppler; Mohammad T Rabbani; Romain Letrun; Jorvani Cruz Villarreal; Dai Hyun Kim; Sahir Gandhi; Ana Egatz-Gomez; Mukul Sonker; Joe Chen; Faisal H M Koua; Jayhow Yang; Mohamed Youssef; Victoria Mazalova; Saša Bajt; Megan L Shelby; Matt A Coleman; Max O Wiedorn; Juraj Knoska; Silvan Schön; Tokushi Sato; Mark S Hunter; Ahmad Hosseinizadeh; Christopher Kuptiz; Reza Nazari; Roberto C Alvarez; Konstantinos Karpos; Sahba Zaare; Zachary Dobson; Erin Discianno; Shangji Zhang; James D Zook; Johan Bielecki; Raphael de Wijn; Adam R Round; Patrik Vagovic; Marco Kloos; Mohammad Vakili; Gihan K Ketawala; Natasha E Stander; Tien L Olson; Katherine Morin; Jyotirmory Mondal; Jonathan Nguyen; José Domingo Meza-Aguilar; Gerdenis Kodis; Sara Vaiana; Jose M Martin-Garcia; Valerio Mariani; Peter Schwander; Marius Schmidt; Marc Messerschmidt; Abbas Ourmazd; Nadia Zatsepin; Uwe Weierstall; Barry D Bruce; Adrian P Mancuso; Thomas Grant; Anton Barty; Henry N Chapman; Matthias Frank; Raimund Fromme; John C H Spence; Sabine Botha; Petra Fromme; Richard A Kirian; Alexandra Ros
Journal:  J Appl Crystallogr       Date:  2022-02-01       Impact factor: 3.304

4.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

Review 5.  Structural insights into melatonin receptors.

Authors:  Benjamin Stauch; Linda C Johansson; Vadim Cherezov
Journal:  FEBS J       Date:  2019-11-23       Impact factor: 5.542

6.  Structural basis of ligand recognition at the human MT1 melatonin receptor.

Authors:  Benjamin Stauch; Linda C Johansson; John D McCorvy; Nilkanth Patel; Gye Won Han; Xi-Ping Huang; Cornelius Gati; Alexander Batyuk; Samuel T Slocum; Andrii Ishchenko; Wolfgang Brehm; Thomas A White; Nairie Michaelian; Caleb Madsen; Lan Zhu; Thomas D Grant; Jessica M Grandner; Anna Shiriaeva; Reid H J Olsen; Alexandra R Tribo; Saïd Yous; Raymond C Stevens; Uwe Weierstall; Vsevolod Katritch; Bryan L Roth; Wei Liu; Vadim Cherezov
Journal:  Nature       Date:  2019-04-24       Impact factor: 49.962

7.  Current status and future opportunities for serial crystallography at MAX IV Laboratory.

Authors:  Anastasya Shilova; Hugo Lebrette; Oskar Aurelius; Jie Nan; Martin Welin; Rebeka Kovacic; Swagatha Ghosh; Cecilia Safari; Ross J Friel; Mirko Milas; Zdenek Matej; Martin Högbom; Gisela Brändén; Marco Kloos; Robert L Shoeman; Bruce Doak; Thomas Ursby; Maria Håkansson; Derek T Logan; Uwe Mueller
Journal:  J Synchrotron Radiat       Date:  2020-08-21       Impact factor: 2.616

Review 8.  Dissecting the Physiology and Pathophysiology of Glucagon-Like Peptide-1.

Authors:  Silvano Paternoster; Marco Falasca
Journal:  Front Endocrinol (Lausanne)       Date:  2018-10-11       Impact factor: 5.555

9.  Structure-based mechanism of cysteinyl leukotriene receptor inhibition by antiasthmatic drugs.

Authors:  Aleksandra Luginina; Anastasiia Gusach; Egor Marin; Alexey Mishin; Rebecca Brouillette; Petr Popov; Anna Shiriaeva; Élie Besserer-Offroy; Jean-Michel Longpré; Elizaveta Lyapina; Andrii Ishchenko; Nilkanth Patel; Vitaly Polovinkin; Nadezhda Safronova; Andrey Bogorodskiy; Evelina Edelweiss; Hao Hu; Uwe Weierstall; Wei Liu; Alexander Batyuk; Valentin Gordeliy; Gye Won Han; Philippe Sarret; Vsevolod Katritch; Valentin Borshchevskiy; Vadim Cherezov
Journal:  Sci Adv       Date:  2019-10-09       Impact factor: 14.136

Review 10.  Molecular mechanisms of metabotropic GABAB receptor function.

Authors:  Hamidreza Shaye; Benjamin Stauch; Cornelius Gati; Vadim Cherezov
Journal:  Sci Adv       Date:  2021-05-28       Impact factor: 14.136

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