Literature DB >> 18604202

Estimation of the available free energy in a LOV2-J alpha photoswitch.

Xiaolan Yao1, Michael K Rosen, Kevin H Gardner.   

Abstract

Protein photosensors are versatile tools for studying ligand-regulated allostery and signaling. Fundamental to these processes is the amount of energy that can be provided by a photosensor to control downstream signaling events. Such regulation is exemplified by the phototropins--plant serine/threonine kinases that are activated by blue light via conserved LOV (light, oxygen and voltage) domains. The core photosensor of oat phototropin 1 is a LOV domain that interacts in a light-dependent fashion with an adjacent alpha-helix (J alpha) to control kinase activity. We used solution NMR measurements to quantify the free energy of the LOV domain-J alpha-helix binding equilibrium in the dark and lit states. These data indicate that light shifts this equilibrium by approximately 3.8 kcal mol(-1), thus quantifying the energy available through LOV-J alpha for light-driven allosteric regulation. This study provides insight into the energetics of light sensing by phototropins and benchmark values for engineering photoswitchable systems based on the LOV-J alpha interaction.

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Year:  2008        PMID: 18604202      PMCID: PMC2597337          DOI: 10.1038/nchembio.99

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  39 in total

1.  Slow dynamics in folded and unfolded states of an SH3 domain.

Authors:  M Tollinger; N R Skrynnikov; F A Mulder; J D Forman-Kay; L E Kay
Journal:  J Am Chem Soc       Date:  2001-11-21       Impact factor: 15.419

2.  The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signalling state formation.

Authors:  M A van der Horst; I H van Stokkum; W Crielaard; K J Hellingwerf
Journal:  FEBS Lett       Date:  2001-05-18       Impact factor: 4.124

3.  Role of an N-terminal loop in the secondary structural change of photoactive yellow protein.

Authors:  Miki Harigai; Yasushi Imamoto; Hironari Kamikubo; Yoichi Yamazaki; Mikio Kataoka
Journal:  Biochemistry       Date:  2003-12-02       Impact factor: 3.162

Review 4.  Photoreceptor proteins, "star actors of modern times": a review of the functional dynamics in the structure of representative members of six different photoreceptor families.

Authors:  Michael A van der Horst; Klaas J Hellingwerf
Journal:  Acc Chem Res       Date:  2004-01       Impact factor: 22.384

5.  Conformational changes in a photosensory LOV domain monitored by time-resolved NMR spectroscopy.

Authors:  Shannon M Harper; Lori C Neil; Iain J Day; P J Hore; Kevin H Gardner
Journal:  J Am Chem Soc       Date:  2004-03-24       Impact factor: 15.419

6.  Functional dynamics of response regulators using NMR relaxation techniques.

Authors:  Alexandra K Gardino; Dorothee Kern
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

7.  Intramolecular proton transfers and structural changes during the photocycle of the LOV2 domain of phototropin 1.

Authors:  Stephanie B Corchnoy; Trevor E Swartz; James W Lewis; Istvan Szundi; Winslow R Briggs; Roberto A Bogomolni
Journal:  J Biol Chem       Date:  2002-10-30       Impact factor: 5.157

8.  Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function.

Authors:  John M Christie; Trevor E Swartz; Roberto A Bogomolni; Winslow R Briggs
Journal:  Plant J       Date:  2002-10       Impact factor: 6.417

9.  LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide.

Authors:  J M Christie; M Salomon; K Nozue; M Wada; W R Briggs
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

10.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

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  61 in total

1.  The amino-terminal helix modulates light-activated conformational changes in AsLOV2.

Authors:  Josiah P Zayner; Chloe Antoniou; Tobin R Sosnick
Journal:  J Mol Biol       Date:  2012-03-07       Impact factor: 5.469

2.  Hold me tightly LOV.

Authors:  Klaus M Hahn; Brian Kuhlman
Journal:  Nat Methods       Date:  2010-08       Impact factor: 28.547

3.  Dynamics connect substrate recognition to catalysis in protein kinase A.

Authors:  Larry R Masterson; Cecilia Cheng; Tao Yu; Marco Tonelli; Alexandr Kornev; Susan S Taylor; Gianluigi Veglia
Journal:  Nat Chem Biol       Date:  2010-10-03       Impact factor: 15.040

4.  NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers.

Authors:  Ashok Sekhar; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-18       Impact factor: 11.205

5.  Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy.

Authors:  Larry R Masterson; Lei Shi; Emily Metcalfe; Jiali Gao; Susan S Taylor; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-06       Impact factor: 11.205

Review 6.  NMR reveals novel mechanisms of protein activity regulation.

Authors:  Charalampos G Kalodimos
Journal:  Protein Sci       Date:  2011-04-08       Impact factor: 6.725

7.  Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein.

Authors:  Abigail I Nash; Reginald McNulty; Mary Elizabeth Shillito; Trevor E Swartz; Roberto A Bogomolni; Hartmut Luecke; Kevin H Gardner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

Review 8.  Optogenetic Immunomodulation: Shedding Light on Antitumor Immunity.

Authors:  Peng Tan; Lian He; Gang Han; Yubin Zhou
Journal:  Trends Biotechnol       Date:  2016-09-28       Impact factor: 19.536

Review 9.  Structure and signaling mechanism of Per-ARNT-Sim domains.

Authors:  Andreas Möglich; Rebecca A Ayers; Keith Moffat
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

10.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

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