Literature DB >> 29380452

Engineered control of enzyme structural dynamics and function.

David D Boehr1, Rebecca N D'Amico1, Kathleen F O'Rourke1.   

Abstract

Enzymes undergo a range of internal motions from local, active site fluctuations to large-scale, global conformational changes. These motions are often important for enzyme function, including in ligand binding and dissociation and even preparing the active site for chemical catalysis. Protein engineering efforts have been directed towards manipulating enzyme structural dynamics and conformational changes, including targeting specific amino acid interactions and creation of chimeric enzymes with new regulatory functions. Post-translational covalent modification can provide an additional level of enzyme control. These studies have not only provided insights into the functional role of protein motions, but they offer opportunities to create stimulus-responsive enzymes. These enzymes can be engineered to respond to a number of external stimuli, including light, pH, and the presence of novel allosteric modulators. Altogether, the ability to engineer and control enzyme structural dynamics can provide new tools for biotechnology and medicine.
© 2018 The Protein Society.

Keywords:  allostery; enzyme catalysis; external stimulus; networks; protein dynamics; protein engineering; stimulus-responsive material; structural dynamics

Mesh:

Substances:

Year:  2018        PMID: 29380452      PMCID: PMC5867014          DOI: 10.1002/pro.3379

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  180 in total

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Review 3.  Designed covalent allosteric modulators: an emerging paradigm in drug discovery.

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Journal:  Drug Discov Today       Date:  2016-11-22       Impact factor: 7.851

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Review 5.  Modulating Mobility: a Paradigm for Protein Engineering?

Authors:  Margaret McAuley; David J Timson
Journal:  Appl Biochem Biotechnol       Date:  2016-07-23       Impact factor: 2.926

Review 6.  Perspective: Defining and quantifying the role of dynamics in enzyme catalysis.

Authors:  Arieh Warshel; Ram Prasad Bora
Journal:  J Chem Phys       Date:  2016-05-14       Impact factor: 3.488

7.  Hot spots for allosteric regulation on protein surfaces.

Authors:  Kimberly A Reynolds; Richard N McLaughlin; Rama Ranganathan
Journal:  Cell       Date:  2011-12-23       Impact factor: 41.582

Review 8.  Protein dynamics and the enzymatic reaction coordinate.

Authors:  Steven D Schwartz
Journal:  Top Curr Chem       Date:  2013

9.  The flexibility of a distant loop modulates active site motion and product release in ribonuclease A.

Authors:  Nicolas Doucet; Eric D Watt; J Patrick Loria
Journal:  Biochemistry       Date:  2009-08-04       Impact factor: 3.162

10.  Extension and limits of the network of coupled motions correlated to hydride transfer in dihydrofolate reductase.

Authors:  Priyanka Singh; Arundhuti Sen; Kevin Francis; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2014-01-31       Impact factor: 15.419

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  9 in total

1.  A Biophysical Perspective on Enzyme Catalysis.

Authors:  Pratul K Agarwal
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  Conformational changes allow processing of bulky substrates by a haloalkane dehalogenase with a small and buried active site.

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Journal:  Curr Opin Biomed Eng       Date:  2019-08-23

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Authors:  Sophie Sacquin-Mora
Journal:  J R Soc Interface       Date:  2019-07-10       Impact factor: 4.118

5.  Molecular Cloning, Purification and Characterization of Mce1R of Mycobacterium tuberculosis.

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Journal:  Mol Biotechnol       Date:  2021-01-09       Impact factor: 2.695

6.  Distinct conformational dynamics and allosteric networks in alpha tryptophan synthase during active catalysis.

Authors:  Kathleen F O'Rourke; Rebecca N D'Amico; Debashish Sahu; David D Boehr
Journal:  Protein Sci       Date:  2020-12-19       Impact factor: 6.725

7.  Thiazole-amino acids: influence of thiazole ring on conformational properties of amino acid residues.

Authors:  Monika Staś; Małgorzata A Broda; Dawid Siodłak
Journal:  Amino Acids       Date:  2021-04-10       Impact factor: 3.520

Review 8.  Harnessing Conformational Plasticity to Generate Designer Enzymes.

Authors:  Rory M Crean; Jasmine M Gardner; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2020-06-17       Impact factor: 15.419

9.  The Emergence of New Catalytic Abilities in an Endoxylanase from Family GH10 by Removing an Intrinsically Disordered Region.

Authors:  Carlos Gil-Durán; Romina V Sepúlveda; Maximiliano Rojas; Víctor Castro-Fernández; Victoria Guixé; Inmaculada Vaca; Gloria Levicán; Fernando D González-Nilo; María-Cristina Ravanal; Renato Chávez
Journal:  Int J Mol Sci       Date:  2022-02-19       Impact factor: 5.923

  9 in total

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