Literature DB >> 30401787

Engineering allosteric regulation in protein kinases.

David Pincus1, Jai P Pandey2, Zoë A Feder2, Pau Creixell3,4,5,6, Orna Resnekov7, Kimberly A Reynolds8,9.   

Abstract

Phosphoregulation, in which the addition of a negatively charged phosphate group modulates protein activity, enables dynamic cellular responses. To understand how new phosphoregulation might be acquired, we mutationally scanned the surface of a prototypical yeast kinase (Kss1) to identify potential regulatory sites. The data revealed a set of spatially distributed "hotspots" that might have coevolved with the active site and preferentially modulated kinase activity. By engineering simple consensus phosphorylation sites at these hotspots, we rewired cell signaling in yeast. Using the same approach with a homolog yeast mitogen-activated protein kinase, Hog1, we introduced new phosphoregulation that modified its localization and signaling dynamics. Beyond revealing potential use in synthetic biology, our findings suggest that the identified hotspots contribute to the diversity of natural allosteric regulatory mechanisms in the eukaryotic kinome and, given that some are mutated in cancers, understanding these hotspots may have clinical relevance to human disease.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2018        PMID: 30401787      PMCID: PMC6662207          DOI: 10.1126/scisignal.aar3250

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  59 in total

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Authors:  Mark E Hatley; Steve W Lockless; Scott K Gibson; Alfred G Gilman; Rama Ranganathan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-17       Impact factor: 11.205

2.  A kinase sequence database: sequence alignments and family assignment.

Authors:  Oleksandr Buzko; Kevan M Shokat
Journal:  Bioinformatics       Date:  2002-09       Impact factor: 6.937

3.  Mechanism of activation of the RAF-ERK signaling pathway by oncogenic mutations of B-RAF.

Authors:  Paul T C Wan; Mathew J Garnett; S Mark Roe; Sharlene Lee; Dan Niculescu-Duvaz; Valerie M Good; C Michael Jones; Christopher J Marshall; Caroline J Springer; David Barford; Richard Marais
Journal:  Cell       Date:  2004-03-19       Impact factor: 41.582

Review 4.  Protein-protein interactions in the allosteric regulation of protein kinases.

Authors:  Patricia Pellicena; John Kuriyan
Journal:  Curr Opin Struct Biol       Date:  2006-10-31       Impact factor: 6.809

5.  An evolution-based strategy for engineering allosteric regulation.

Authors:  David Pincus; Orna Resnekov; Kimberly A Reynolds
Journal:  Phys Biol       Date:  2017-04-28       Impact factor: 2.583

6.  Mechanistic link between PKR dimerization, autophosphorylation, and eIF2alpha substrate recognition.

Authors:  Madhusudan Dey; Chune Cao; Arvin C Dar; Tomohiko Tamura; Keiko Ozato; Frank Sicheri; Thomas E Dever
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

7.  Phenotypic Characterization of a Comprehensive Set of MAPK1/ERK2 Missense Mutants.

Authors:  Lisa Brenan; Aleksandr Andreev; Ofir Cohen; Sasha Pantel; Atanas Kamburov; Davide Cacchiarelli; Nicole S Persky; Cong Zhu; Mukta Bagul; Eva M Goetz; Alex B Burgin; Levi A Garraway; Gad Getz; Tarjei S Mikkelsen; Federica Piccioni; David E Root; Cory M Johannessen
Journal:  Cell Rep       Date:  2016-10-18       Impact factor: 9.423

8.  Discovery of an allosteric site in the caspases.

Authors:  Jeanne A Hardy; Joni Lam; Jack T Nguyen; Tom O'Brien; James A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

9.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

10.  Protein sectors: evolutionary units of three-dimensional structure.

Authors:  Najeeb Halabi; Olivier Rivoire; Stanislas Leibler; Rama Ranganathan
Journal:  Cell       Date:  2009-08-21       Impact factor: 41.582

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-23       Impact factor: 12.779

2.  Mapping allosteric communications within individual proteins.

Authors:  Jian Wang; Abha Jain; Leanna R McDonald; Craig Gambogi; Andrew L Lee; Nikolay V Dokholyan
Journal:  Nat Commun       Date:  2020-07-31       Impact factor: 14.919

  2 in total

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