Literature DB >> 27865050

NMR Spectroscopic Assignment of Backbone and Side-Chain Protons in Fully Protonated Proteins: Microcrystals, Sedimented Assemblies, and Amyloid Fibrils.

Jan Stanek1, Loren B Andreas1, Kristaps Jaudzems1, Diane Cala1, Daniela Lalli1, Andrea Bertarello1, Tobias Schubeis1, Inara Akopjana2, Svetlana Kotelovica2, Kaspars Tars2, Andrea Pica3, Serena Leone3, Delia Picone3, Zhi-Qiang Xu4, Nicholas E Dixon4, Denis Martinez5, Mélanie Berbon5, Nadia El Mammeri5, Abdelmajid Noubhani5, Sven Saupe6, Birgit Habenstein5, Antoine Loquet5, Guido Pintacuda1.   

Abstract

We demonstrate sensitive detection of alpha protons of fully protonated proteins by solid-state NMR spectroscopy with 100-111 kHz magic-angle spinning (MAS). The excellent resolution in the Cα-Hα plane is demonstrated for 5 proteins, including microcrystals, a sedimented complex, a capsid and amyloid fibrils. A set of 3D spectra based on a Cα-Hα detection block was developed and applied for the sequence-specific backbone and aliphatic side-chain resonance assignment using only 500 μg of sample. These developments accelerate structural studies of biomolecular assemblies available in submilligram quantities without the need of protein deuteration.
© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  magic-angle spinning; proton detection; resonance assignment; solid-state NMR spectroscopy

Mesh:

Substances:

Year:  2016        PMID: 27865050     DOI: 10.1002/anie.201607084

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  37 in total

1.  Expanding the horizons for structural analysis of fully protonated protein assemblies by NMR spectroscopy at MAS frequencies above 100 kHz.

Authors:  Jochem Struppe; Caitlin M Quinn; Manman Lu; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Jodi Kraus; Loren B Andreas; Jan Stanek; Daniela Lalli; Anne Lesage; Guido Pintacuda; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Solid State Nucl Magn Reson       Date:  2017-07-03       Impact factor: 2.293

2.  Structural and molecular basis of cross-seeding barriers in amyloids.

Authors:  Asen Daskalov; Denis Martinez; Virginie Coustou; Nadia El Mammeri; Mélanie Berbon; Loren B Andreas; Benjamin Bardiaux; Jan Stanek; Abdelmajid Noubhani; Brice Kauffmann; Joseph S Wall; Guido Pintacuda; Sven J Saupe; Birgit Habenstein; Antoine Loquet
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-05       Impact factor: 11.205

Review 3.  Understanding amyloid fibril formation using protein fragments: structural investigations via vibrational spectroscopy and solid-state NMR.

Authors:  Benjamin Martial; Thierry Lefèvre; Michèle Auger
Journal:  Biophys Rev       Date:  2018-05-31

4.  Fast MAS 1H-13C correlation NMR for structural investigations of plant cell walls.

Authors:  Pyae Phyo; Mei Hong
Journal:  J Biomol NMR       Date:  2019-09-18       Impact factor: 2.835

5.  Electrostatic Constraints Assessed by 1H MAS NMR Illuminate Differences in Crystalline Polymorphs.

Authors:  Joshua T Damron; Kortney M Kersten; Manoj Kumar Pandey; Kamal H Mroue; Jayasubba Reddy Yarava; Yusuke Nishiyama; Adam J Matzger; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem Lett       Date:  2017-08-25       Impact factor: 6.475

6.  1H-Detected REDOR with Fast Magic-Angle Spinning of a Deuterated Protein.

Authors:  Manali Ghosh; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2017-08-31       Impact factor: 2.991

7.  Progress in proton-detected solid-state NMR (SSNMR): Super-fast 2D SSNMR collection for nano-mole-scale proteins.

Authors:  Yoshitaka Ishii; Ayesha Wickramasinghe; Isamu Matsuda; Yuki Endo; Yuji Ishii; Yusuke Nishiyama; Takahiro Nemoto; Takayuki Kamihara
Journal:  J Magn Reson       Date:  2017-11-28       Impact factor: 2.229

8.  MAS dependent sensitivity of different isotopomers in selectively methyl protonated protein samples in solid state NMR.

Authors:  Kai Xue; Riddhiman Sarkar; Zdenek Tosner; Daniela Lalli; Carina Motz; Benita Koch; Guido Pintacuda; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-09-12       Impact factor: 2.835

9.  High-Sensitivity Detection of Nanometer 1H-19F Distances for Protein Structure Determination by 1H-Detected Fast MAS NMR.

Authors:  Alexander A Shcherbakov; Venkata Shiva Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2019-05-08       Impact factor: 2.991

Review 10.  Use of paramagnetic systems to speed-up NMR data acquisition and for structural and dynamic studies.

Authors:  Vojč Kocman; Giacomo M Di Mauro; Gianluigi Veglia; Ayyalusamy Ramamoorthy
Journal:  Solid State Nucl Magn Reson       Date:  2019-07-12       Impact factor: 2.293

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