Literature DB >> 31515660

MAS dependent sensitivity of different isotopomers in selectively methyl protonated protein samples in solid state NMR.

Kai Xue1, Riddhiman Sarkar2,3, Zdenek Tosner4, Daniela Lalli5, Carina Motz6, Benita Koch6, Guido Pintacuda5,7, Bernd Reif8,9.   

Abstract

Sensitivity and resolution together determine the quality of NMR spectra in biological solids. For high-resolution structure determination with solid-state NMR, proton-detection emerged as an attractive strategy in the last few years. Recent progress in probe technology has extended the range of available MAS frequencies up to above 100 kHz, enabling the detection of resolved resonances from sidechain protons, which are important reporters of structure. Here we characterise the interplay between MAS frequency in the newly available range of 70-110 kHz and proton content on the spectral quality obtainable on a 1 GHz spectrometer for methyl resonances. Variable degrees of proton densities are tested on microcrystalline samples of the α-spectrin SH3 domain with selectively protonated methyl isotopomers (CH3, CH2D, CHD2) in a perdeuterated matrix. The experimental results are supported by simulations that allow the prediction of the sensitivity outside this experimental frequency window. Our results facilitate the selection of the appropriate labelling scheme at a given MAS rotation frequency.

Entities:  

Keywords:  CH3 labelling; Magic angle spinning (MAS); Methyl isotopomers; Microcrystalline proteins; Selective deuteration; Solid state NMR

Mesh:

Substances:

Year:  2019        PMID: 31515660     DOI: 10.1007/s10858-019-00274-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  34 in total

1.  Sensitivity enhancement in solid-state (13)C NMR of synthetic polymers and biopolymers by (1)H NMR detection with high-speed magic angle spinning.

Authors:  Y Ishii; J P Yesinowski; R Tycko
Journal:  J Am Chem Soc       Date:  2001-03-28       Impact factor: 15.419

2.  Protein resonance assignment at MAS frequencies approaching 100 kHz: a quantitative comparison of J-coupling and dipolar-coupling-based transfer methods.

Authors:  Susanne Penzel; Albert A Smith; Vipin Agarwal; Andreas Hunkeler; Mai-Liis Org; Ago Samoson; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2015-08-13       Impact factor: 2.835

3.  Sensitivity and resolution of proton detected spectra of a deuterated protein at 40 and 60 kHz magic-angle-spinning.

Authors:  Andrew J Nieuwkoop; W Trent Franks; Kristina Rehbein; Anne Diehl; Ümit Akbey; Frank Engelke; Lyndon Emsley; Guido Pintacuda; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2015-02-08       Impact factor: 2.835

4.  Solution NMR of supramolecular complexes: providing new insights into function.

Authors:  Remco Sprangers; Algirdas Velyvis; Lewis E Kay
Journal:  Nat Methods       Date:  2007-09       Impact factor: 28.547

5.  Site-specific solid-state NMR studies of "trigger factor" in complex with the large ribosomal subunit 50S.

Authors:  Emeline Barbet-Massin; Chih-Ting Huang; Venita Daebel; Shang-Te Danny Hsu; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-05       Impact factor: 15.336

6.  Reconstitution of Isotopically Labeled Ribosomal Protein L29 in the 50S Large Ribosomal Subunit for Solution-State and Solid-State NMR.

Authors:  Emeline Barbet-Massin; Eli van der Sluis; Joanna Musial; Roland Beckmann; Bernd Reif
Journal:  Methods Mol Biol       Date:  2018

7.  Protein side-chain dynamics as observed by solution- and solid-state NMR spectroscopy: a similarity revealed.

Authors:  Vipin Agarwal; Yi Xue; Bernd Reif; Nikolai R Skrynnikov
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

8.  An Efficient Labelling Approach to Harness Backbone and Side-Chain Protons in (1) H-Detected Solid-State NMR Spectroscopy.

Authors:  Deni Mance; Tessa Sinnige; Mohammed Kaplan; Siddarth Narasimhan; Mark Daniëls; Klaartje Houben; Marc Baldus; Markus Weingarth
Journal:  Angew Chem Int Ed Engl       Date:  2015-11-11       Impact factor: 15.336

9.  Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.

Authors:  Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Daniela Lalli; Andrea Bertarello; Tanguy Le Marchand; Diane Cala-De Paepe; Svetlana Kotelovica; Inara Akopjana; Benno Knott; Sebastian Wegner; Frank Engelke; Anne Lesage; Lyndon Emsley; Kaspars Tars; Torsten Herrmann; Guido Pintacuda
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-03       Impact factor: 11.205

10.  Limits of Resolution and Sensitivity of Proton Detected MAS Solid-State NMR Experiments at 111 kHz in Deuterated and Protonated Proteins.

Authors:  Kai Xue; Riddhiman Sarkar; Carina Motz; Sam Asami; Diana C Rodriguez Camargo; Venita Decker; Sebastian Wegner; Zdenek Tosner; Bernd Reif
Journal:  Sci Rep       Date:  2017-08-07       Impact factor: 4.379

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  4 in total

1.  Protein Side-Chain-DNA Contacts Probed by Fast Magic-Angle Spinning NMR.

Authors:  Denis Lacabanne; Julien Boudet; Alexander A Malär; Pengzhi Wu; Riccardo Cadalbert; Loic Salmon; Frédéric H-T Allain; Beat H Meier; Thomas Wiegand
Journal:  J Phys Chem B       Date:  2020-11-25       Impact factor: 2.991

2.  NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond 13C Homonuclear Transfers, Proton Detection, and Very Fast MAS.

Authors:  Piotr Paluch; Rafal Augustyniak; Mai-Liis Org; Kalju Vanatalu; Ats Kaldma; Ago Samoson; Jan Stanek
Journal:  Front Mol Biosci       Date:  2022-03-29

3.  Proton Detected Solid-State NMR of Membrane Proteins at 28 Tesla (1.2 GHz) and 100 kHz Magic-Angle Spinning.

Authors:  Evgeny Nimerovsky; Kumar Tekwani Movellan; Xizhou Cecily Zhang; Marcel C Forster; Eszter Najbauer; Kai Xue; Rıza Dervişoǧlu; Karin Giller; Christian Griesinger; Stefan Becker; Loren B Andreas
Journal:  Biomolecules       Date:  2021-05-18

4.  Mapping the Binding Interface of PET Tracer Molecules and Alzheimer Disease Aβ Fibrils by Using MAS Solid-State NMR Spectroscopy.

Authors:  Zheng Niu; Riddhiman Sarkar; Michaela Aichler; Hans-Jürgen Wester; Behrooz Hooshyar Yousefi; Bernd Reif
Journal:  Chembiochem       Date:  2020-05-19       Impact factor: 3.164

  4 in total

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