Literature DB >> 27791135

Crystal structure of the cohesin loader Scc2 and insight into cohesinopathy.

Sotaro Kikuchi1,2, Dominika M Borek3, Zbyszek Otwinowski3, Diana R Tomchick3, Hongtao Yu4,2.   

Abstract

The ring-shaped cohesin complex topologically entraps chromosomes and regulates chromosome segregation, transcription, and DNA repair. The cohesin core consists of the structural maintenance of chromosomes 1 and 3 (Smc1-Smc3) heterodimeric ATPase, the kleisin subunit sister chromatid cohesion 1 (Scc1) that links the two ATPase heads, and the Scc1-bound adaptor protein Scc3. The sister chromatid cohesion 2 and 4 (Scc2-Scc4) complex loads cohesin onto chromosomes. Mutations of cohesin and its regulators, including Scc2, cause human developmental diseases termed cohesinopathy. Here, we report the crystal structure of Chaetomium thermophilum (Ct) Scc2 and examine its interaction with cohesin. Similar to Scc3 and another Scc1-interacting cohesin regulator, precocious dissociation of sisters 5 (Pds5), Scc2 consists mostly of helical repeats that fold into a hook-shaped structure. Scc2 binds to Scc1 through an N-terminal region of Scc1 that overlaps with its Pds5-binding region. Many cohesinopathy mutations target conserved residues in Scc2 and diminish Ct Scc2 binding to Ct Scc1. Pds5 binding to Scc1 weakens the Scc2-Scc1 interaction. Our study defines a functionally important interaction between the kleisin subunit of cohesin and the hook of Scc2. Through competing with Scc2 for Scc1 binding, Pds5 might contribute to the release of Scc2 from loaded cohesin, freeing Scc2 for additional rounds of loading.

Entities:  

Keywords:  HEAT repeat; X-ray crystallography; cohesin loading; cohesinopathy; transcription

Mesh:

Substances:

Year:  2016        PMID: 27791135      PMCID: PMC5098657          DOI: 10.1073/pnas.1611333113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  62 in total

1.  Measurement errors and their consequences in protein crystallography.

Authors:  Dominika Borek; Wladek Minor; Zbyszek Otwinowski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-10-23

2.  Eco1 is a novel acetyltransferase that can acetylate proteins involved in cohesion.

Authors:  Dmitri Ivanov; Alexander Schleiffer; Frank Eisenhaber; Karl Mechtler; Christian H Haering; Kim Nasmyth
Journal:  Curr Biol       Date:  2002-02-19       Impact factor: 10.834

Review 3.  Cohesinopathies, gene expression, and chromatin organization.

Authors:  Tania Bose; Jennifer L Gerton
Journal:  J Cell Biol       Date:  2010-04-19       Impact factor: 10.539

4.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

5.  ATP hydrolysis is required for cohesin's association with chromosomes.

Authors:  Prakash Arumugam; Stephan Gruber; Koichi Tanaka; Christian H Haering; Karl Mechtler; Kim Nasmyth
Journal:  Curr Biol       Date:  2003-11-11       Impact factor: 10.834

6.  An Smc3 acetylation cycle is essential for establishment of sister chromatid cohesion.

Authors:  Frederic Beckouët; Bin Hu; Maurici B Roig; Takashi Sutani; Makiko Komata; Pelin Uluocak; Vittorio L Katis; Katsuhiko Shirahige; Kim Nasmyth
Journal:  Mol Cell       Date:  2010-09-10       Impact factor: 17.970

7.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

8.  Structural Basis and IP6 Requirement for Pds5-Dependent Cohesin Dynamics.

Authors:  Zhuqing Ouyang; Ge Zheng; Diana R Tomchick; Xuelian Luo; Hongtao Yu
Journal:  Mol Cell       Date:  2016-03-10       Impact factor: 17.970

9.  NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome.

Authors:  Emma T Tonkin; Tzu-Jou Wang; Steven Lisgo; Michael J Bamshad; Tom Strachan
Journal:  Nat Genet       Date:  2004-05-16       Impact factor: 38.330

10.  HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle.

Authors:  Matthew A Deardorff; Masashige Bando; Ryuichiro Nakato; Erwan Watrin; Takehiko Itoh; Masashi Minamino; Katsuya Saitoh; Makiko Komata; Yuki Katou; Dinah Clark; Kathryn E Cole; Elfride De Baere; Christophe Decroos; Nataliya Di Donato; Sarah Ernst; Lauren J Francey; Yolanda Gyftodimou; Kyotaro Hirashima; Melanie Hullings; Yuuichi Ishikawa; Christian Jaulin; Maninder Kaur; Tohru Kiyono; Patrick M Lombardi; Laura Magnaghi-Jaulin; Geert R Mortier; Naohito Nozaki; Michael B Petersen; Hiroyuki Seimiya; Victoria M Siu; Yutaka Suzuki; Kentaro Takagaki; Jonathan J Wilde; Patrick J Willems; Claude Prigent; Gabriele Gillessen-Kaesbach; David W Christianson; Frank J Kaiser; Laird G Jackson; Toru Hirota; Ian D Krantz; Katsuhiko Shirahige
Journal:  Nature       Date:  2012-09-13       Impact factor: 49.962

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  45 in total

Review 1.  Genome folding through loop extrusion by SMC complexes.

Authors:  Iain F Davidson; Jan-Michael Peters
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-25       Impact factor: 94.444

Review 2.  The torments of the cohesin ring.

Authors:  Alap P Chavda; Keven Ang; Dmitri Ivanov
Journal:  Nucleus       Date:  2017-02-27       Impact factor: 4.197

Review 3.  New insights into cohesin loading.

Authors:  Ireneusz Litwin; Robert Wysocki
Journal:  Curr Genet       Date:  2017-06-19       Impact factor: 3.886

Review 4.  A new twist in the coil: functions of the coiled-coil domain of structural maintenance of chromosome (SMC) proteins.

Authors:  Avi Matityahu; Itay Onn
Journal:  Curr Genet       Date:  2017-08-23       Impact factor: 3.886

5.  Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

Authors:  Gordana Wutz; Csilla Várnai; Kota Nagasaka; David A Cisneros; Roman R Stocsits; Wen Tang; Stefan Schoenfelder; Gregor Jessberger; Matthias Muhar; M Julius Hossain; Nike Walther; Birgit Koch; Moritz Kueblbeck; Jan Ellenberg; Johannes Zuber; Peter Fraser; Jan-Michael Peters
Journal:  EMBO J       Date:  2017-12-07       Impact factor: 11.598

6.  Maize Dek15 Encodes the Cohesin-Loading Complex Subunit SCC4 and Is Essential for Chromosome Segregation and Kernel Development.

Authors:  Yonghui He; Jinguang Wang; Weiwei Qi; Rentao Song
Journal:  Plant Cell       Date:  2019-01-31       Impact factor: 11.277

Review 7.  A tethered-inchworm model of SMC DNA translocation.

Authors:  Michael H Nichols; Victor G Corces
Journal:  Nat Struct Mol Biol       Date:  2018-09-24       Impact factor: 15.369

Review 8.  Structural insights into DNA loop extrusion by SMC protein complexes.

Authors:  Sumanjit Datta; Léa Lecomte; Christian H Haering
Journal:  Curr Opin Struct Biol       Date:  2020-07-13       Impact factor: 6.809

9.  Folding of cohesin's coiled coil is important for Scc2/4-induced association with chromosomes.

Authors:  Naomi J Petela; Andres Gonzalez Llamazares; Sarah Dixon; Bin Hu; Byung-Gil Lee; Jean Metson; Heekyo Seo; Antonio Ferrer-Harding; Menelaos Voulgaris; Thomas Gligoris; James Collier; Byung-Ha Oh; Jan Löwe; Kim A Nasmyth
Journal:  Elife       Date:  2021-07-14       Impact factor: 8.140

Review 10.  Towards a Structural Mechanism for Sister Chromatid Cohesion Establishment at the Eukaryotic Replication Fork.

Authors:  Sarah S Henrikus; Alessandro Costa
Journal:  Biology (Basel)       Date:  2021-05-26
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