Literature DB >> 32674008

Structural insights into DNA loop extrusion by SMC protein complexes.

Sumanjit Datta1, Léa Lecomte1, Christian H Haering2.   

Abstract

Structural Maintenance of Chromosomes (SMC) protein complexes play key roles in the three-dimensional organization of genomes in all kingdoms of life. Recent insights from chromosome contact mapping experiments and single-molecule imaging assays suggest that these complexes achieve distinct cellular functions by extruding large loops of DNA while they move along the chromatin fiber. In this short review, we summarize recent insights into the molecular architecture of these unconventional DNA motor complexes, their interaction with their DNA substrates, and the remarkable dynamic changes they can undergo during their ATPase reaction cycle.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32674008      PMCID: PMC7612452          DOI: 10.1016/j.sbi.2020.06.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  58 in total

Review 1.  Towards a Unified Model of SMC Complex Function.

Authors:  Markus Hassler; Indra A Shaltiel; Christian H Haering
Journal:  Curr Biol       Date:  2018-11-05       Impact factor: 10.834

2.  Structural studies of a bacterial condensin complex reveal ATP-dependent disruption of intersubunit interactions.

Authors:  Jae-Sung Woo; Jae-Hong Lim; Ho-Chul Shin; Min-Kang Suh; Bonsu Ku; Kwang-Hoon Lee; Keehyoung Joo; Howard Robinson; Jooyoung Lee; Sam-Yong Park; Nam-Chul Ha; Byung-Ha Oh
Journal:  Cell       Date:  2009-01-09       Impact factor: 41.582

3.  Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus.

Authors:  Xindan Wang; Hugo B Brandão; Tung B K Le; Michael T Laub; David Z Rudner
Journal:  Science       Date:  2017-02-03       Impact factor: 47.728

4.  DNA-loop extruding condensin complexes can traverse one another.

Authors:  Eugene Kim; Jacob Kerssemakers; Indra A Shaltiel; Christian H Haering; Cees Dekker
Journal:  Nature       Date:  2020-03-04       Impact factor: 49.962

5.  Condensin Smc2-Smc4 Dimers Are Flexible and Dynamic.

Authors:  Jorine M Eeftens; Allard J Katan; Marc Kschonsak; Markus Hassler; Liza de Wilde; Essam M Dief; Christian H Haering; Cees Dekker
Journal:  Cell Rep       Date:  2016-02-18       Impact factor: 9.423

6.  Structural basis of HEAT-kleisin interactions in the human condensin I subcomplex.

Authors:  Kodai Hara; Kazuhisa Kinoshita; Tomoko Migita; Kei Murakami; Kenichiro Shimizu; Kozo Takeuchi; Tatsuya Hirano; Hiroshi Hashimoto
Journal:  EMBO Rep       Date:  2019-03-11       Impact factor: 8.807

7.  Sister DNA Entrapment between Juxtaposed Smc Heads and Kleisin of the Cohesin Complex.

Authors:  Christophe Chapard; Robert Jones; Till van Oepen; Johanna C Scheinost; Kim Nasmyth
Journal:  Mol Cell       Date:  2019-06-11       Impact factor: 17.970

Review 8.  Condensin action and compaction.

Authors:  Matthew Robert Paul; Andreas Hochwagen; Sevinç Ercan
Journal:  Curr Genet       Date:  2018-10-25       Impact factor: 3.886

9.  Compaction and segregation of sister chromatids via active loop extrusion.

Authors:  Anton Goloborodko; Maxim V Imakaev; John F Marko; Leonid Mirny
Journal:  Elife       Date:  2016-05-18       Impact factor: 8.140

10.  The Cohesin Ring Uses Its Hinge to Organize DNA Using Non-topological as well as Topological Mechanisms.

Authors:  Madhusudhan Srinivasan; Johanna C Scheinost; Naomi J Petela; Thomas G Gligoris; Maria Wissler; Sugako Ogushi; James E Collier; Menelaos Voulgaris; Alexander Kurze; Kok-Lung Chan; Bin Hu; Vincenzo Costanzo; Kim A Nasmyth
Journal:  Cell       Date:  2018-05-10       Impact factor: 41.582

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  6 in total

1.  Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization.

Authors:  Pavan Choppakatla; Bastiaan Dekker; Erin E Cutts; Alessandro Vannini; Job Dekker; Hironori Funabiki
Journal:  Elife       Date:  2021-08-18       Impact factor: 8.140

2.  DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations.

Authors:  Stefanos K Nomidis; Enrico Carlon; Stephan Gruber; John F Marko
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 19.160

Review 3.  DNA Manipulation and Single-Molecule Imaging.

Authors:  Shunsuke Takahashi; Masahiko Oshige; Shinji Katsura
Journal:  Molecules       Date:  2021-02-17       Impact factor: 4.411

4.  Cryo-EM structure of the Smc5/6 holo-complex.

Authors:  Stephen T Hallett; Isabella Campbell Harry; Pascale Schellenberger; Lihong Zhou; Nora B Cronin; Jonathan Baxter; Thomas J Etheridge; Johanne M Murray; Antony W Oliver
Journal:  Nucleic Acids Res       Date:  2022-08-22       Impact factor: 19.160

Review 5.  Functional Coupling between DNA Replication and Sister Chromatid Cohesion Establishment.

Authors:  Ana Boavida; Diana Santos; Mohammad Mahtab; Francesca M Pisani
Journal:  Int J Mol Sci       Date:  2021-03-10       Impact factor: 5.923

Review 6.  Mitotic chromosomes.

Authors:  James R Paulson; Damien F Hudson; Fernanda Cisneros-Soberanis; William C Earnshaw
Journal:  Semin Cell Dev Biol       Date:  2021-04-06       Impact factor: 7.727

  6 in total

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