Literature DB >> 30250225

A tethered-inchworm model of SMC DNA translocation.

Michael H Nichols1, Victor G Corces2.   

Abstract

The DNA loop extrusion model is a provocative new concept explaining the formation of chromatin loops that revolutionizes understanding of genome organization. Central to this model is the structural maintenance of chromosomes (SMC) protein family, which is now thought to function as a DNA motor. In this Perspective, we review and reinterpret the current knowledge of SMC structure and function and propose a novel mechanism for SMC motor activity.

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Year:  2018        PMID： 30250225      PMCID： PMC6311135          DOI： 10.1038/s41594-018-0135-4

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


  45 in total

Review 1.  Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis.

Authors:  K Nasmyth
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

2.  Cohesin acetylation and Wapl-Pds5 oppositely regulate translocation of cohesin along DNA.

Authors:  Mai Kanke; Eri Tahara; Pim J Huis In't Veld; Tomoko Nishiyama
Journal:  EMBO J       Date:  2016-11-21       Impact factor: 11.598

3.  Molecular basis of SMC ATPase activation: role of internal structural changes of the regulatory subcomplex ScpAB.

Authors:  Katsuhiko Kamada; Makoto Miyata; Tatsuya Hirano
Journal:  Structure       Date:  2013-04-02       Impact factor: 5.006

4.  Cohesin Loss Eliminates All Loop Domains.

Authors:  Suhas S P Rao; Su-Chen Huang; Brian Glenn St Hilaire; Jesse M Engreitz; Elizabeth M Perez; Kyong-Rim Kieffer-Kwon; Adrian L Sanborn; Sarah E Johnstone; Gavin D Bascom; Ivan D Bochkov; Xingfan Huang; Muhammad S Shamim; Jaeweon Shin; Douglass Turner; Ziyi Ye; Arina D Omer; James T Robinson; Tamar Schlick; Bradley E Bernstein; Rafael Casellas; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

5.  Osmotic mechanism of the loop extrusion process.

Authors:  Tetsuya Yamamoto; Helmut Schiessel
Journal:  Phys Rev E       Date:  2017-09-22       Impact factor: 2.529

6.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

7.  Rapid movement and transcriptional re-localization of human cohesin on DNA.

Authors:  Iain F Davidson; Daniela Goetz; Maciej P Zaczek; Maxim I Molodtsov; Pim J Huis In 't Veld; Florian Weissmann; Gabriele Litos; David A Cisneros; Maria Ocampo-Hafalla; Rene Ladurner; Frank Uhlmann; Alipasha Vaziri; Jan-Michael Peters
Journal:  EMBO J       Date:  2016-10-31       Impact factor: 11.598

Review 8.  Cohesin biology meets the loop extrusion model.

Authors:  Christopher Barrington; Ronald Finn; Suzana Hadjur
Journal:  Chromosome Res       Date:  2017-02-16       Impact factor: 5.239

9.  Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes.

Authors:  Dusan Racko; Fabrizio Benedetti; Julien Dorier; Andrzej Stasiak
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

10.  The Cohesin Ring Uses Its Hinge to Organize DNA Using Non-topological as well as Topological Mechanisms.

Authors:  Madhusudhan Srinivasan; Johanna C Scheinost; Naomi J Petela; Thomas G Gligoris; Maria Wissler; Sugako Ogushi; James E Collier; Menelaos Voulgaris; Alexander Kurze; Kok-Lung Chan; Bin Hu; Vincenzo Costanzo; Kim A Nasmyth
Journal:  Cell       Date:  2018-05-10       Impact factor: 41.582
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  16 in total

Review 1.  Two major mechanisms of chromosome organization.

Authors:  Leonid A Mirny; Maxim Imakaev; Nezar Abdennur
Journal:  Curr Opin Cell Biol       Date:  2019-06-20       Impact factor: 8.382

Review 2.  Genome folding through loop extrusion by SMC complexes.

Authors:  Iain F Davidson; Jan-Michael Peters
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-25       Impact factor: 94.444

3.  The regulation of chromosome segregation via centromere loops.

Authors:  Josh Lawrimore; Kerry Bloom
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-10-01       Impact factor: 8.250

Review 4.  Function and regulation of chromatin insulators in dynamic genome organization.

Authors:  Dahong Chen; Elissa P Lei
Journal:  Curr Opin Cell Biol       Date:  2019-03-12       Impact factor: 8.382

5.  Three-dimensional loop extrusion.

Authors:  Andrea Bonato; Davide Michieletto
Journal:  Biophys J       Date:  2021-11-15       Impact factor: 4.033

6.  Cohesin mediates DNA loop extrusion by a "swing and clamp" mechanism.

Authors:  Benedikt W Bauer; Iain F Davidson; Daniel Canena; Gordana Wutz; Wen Tang; Gabriele Litos; Sabrina Horn; Peter Hinterdorfer; Jan-Michael Peters
Journal:  Cell       Date:  2021-10-07       Impact factor: 41.582

7.  DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations.

Authors:  Stefanos K Nomidis; Enrico Carlon; Stephan Gruber; John F Marko
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 19.160

8.  The Role of REC8 in the Innate Immune Response to Viral Infection.

Authors:  Shengwen Chen; Qian Liu; Lini Zhang; Jiahuan Ma; Binbin Xue; Huiyi Li; Rilin Deng; Mengmeng Guo; Yan Xu; Renyun Tian; Jingjing Wang; Wenyan Cao; Qiong Yang; Luolin Wang; Xinran Li; Shun Liu; Di Yang; Haizhen Zhu
Journal:  J Virol       Date:  2022-02-02       Impact factor: 6.549

9.  Determining cellular CTCF and cohesin abundances to constrain 3D genome models.

Authors:  Iryna Pustova; Nike Walther; Claudia Cattoglio; Jaclyn J Ho; Merle Hantsche-Grininger; Carla J Inouye; M Julius Hossain; Gina M Dailey; Jan Ellenberg; Xavier Darzacq; Robert Tjian; Anders S Hansen
Journal:  Elife       Date:  2019-06-17       Impact factor: 8.140

10.  RNA polymerases as moving barriers to condensin loop extrusion.

Authors:  Hugo B Brandão; Payel Paul; Aafke A van den Berg; David Z Rudner; Xindan Wang; Leonid A Mirny
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205
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