Literature DB >> 28835994

A new twist in the coil: functions of the coiled-coil domain of structural maintenance of chromosome (SMC) proteins.

Avi Matityahu1, Itay Onn2.   

Abstract

The higher-order organization of chromosomes ensures their stability and functionality. However, the molecular mechanism by which higher order structure is established is poorly understood. Dissecting the activity of the relevant proteins provides information essential for achieving a comprehensive understanding of chromosome structure. Proteins of the structural maintenance of chromosome (SMC) family of ATPases are the core of evolutionary conserved complexes. SMC complexes are involved in regulating genome dynamics and in maintaining genome stability. The structure of all SMC proteins resembles an elongated rod that contains a central coiled-coil domain, a common protein structural motif in which two α-helices twist together. In recent years, the imperative role of the coiled-coil domain to SMC protein activity and regulation has become evident. Here, we discuss recent advances in the function of the SMC coiled coils. We describe the structure of the coiled-coil domain of SMC proteins, modifications and interactions that are mediated by it. Furthermore, we assess the role of the coiled-coil domain in conformational switches of SMC proteins, and in determining the architecture of the SMC dimer. Finally, we review the interplay between mutations in the coiled-coil domain and human disorders. We suggest that distinctive properties of coiled coils of different SMC proteins contribute to their distinct functions. The discussion clarifies the mechanisms underlying the activity of SMC proteins, and advocates future studies to elucidate the function of the SMC coiled coil domain.

Entities:  

Keywords:  Chromosome structure; Cohesin; Coiled-coil domain; Condensin; SMC5/6; Structural maintenance of chromosome (SMC) proteins

Mesh:

Substances:

Year:  2017        PMID: 28835994     DOI: 10.1007/s00294-017-0735-2

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  59 in total

1.  Condensin architecture and interaction with DNA: regulatory non-SMC subunits bind to the head of SMC heterodimer.

Authors:  Shige H Yoshimura; Kohji Hizume; Akiko Murakami; Takashi Sutani; Kunio Takeyasu; Mitsuhiro Yanagida
Journal:  Curr Biol       Date:  2002-03-19       Impact factor: 10.834

Review 2.  The structure and function of SMC and kleisin complexes.

Authors:  Kim Nasmyth; Christian H Haering
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

Review 3.  SMC complexes: from DNA to chromosomes.

Authors:  Frank Uhlmann
Journal:  Nat Rev Mol Cell Biol       Date:  2016-04-14       Impact factor: 94.444

4.  Composition and architecture of the Schizosaccharomyces pombe Rad18 (Smc5-6) complex.

Authors:  John Sergeant; Elaine Taylor; Jan Palecek; Maria Fousteri; Emily A Andrews; Sara Sweeney; Hideo Shinagawa; Felicity Z Watts; Alan R Lehmann
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

Review 5.  Condensin-mediated chromosome organization in fission yeast.

Authors:  Osamu Iwasaki; Ken-Ichi Noma
Journal:  Curr Genet       Date:  2016-04-09       Impact factor: 3.886

6.  Crystallization and preliminary X-Ray diffraction analysis of the 190-A-long coiled-coil dimerization domain of the actin-bundling protein cortexillin I from dictyostelium discoideum

Authors: 
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867

7.  The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.

Authors:  Yinyin Li; Allyn J Schoeffler; James M Berger; Martha G Oakley
Journal:  J Mol Biol       Date:  2009-10-22       Impact factor: 5.469

8.  De novo heterozygous mutations in SMC3 cause a range of Cornelia de Lange syndrome-overlapping phenotypes.

Authors:  María Concepción Gil-Rodríguez; Matthew A Deardorff; Morad Ansari; Christopher A Tan; Ilaria Parenti; Carolina Baquero-Montoya; Lilian B Ousager; Beatriz Puisac; María Hernández-Marcos; María Esperanza Teresa-Rodrigo; Iñigo Marcos-Alcalde; Jan-Jaap Wesselink; Silvia Lusa-Bernal; Emilia K Bijlsma; Diana Braunholz; Inés Bueno-Martinez; Dinah Clark; Nicola S Cooper; Cynthia J Curry; Richard Fisher; Alan Fryer; Jaya Ganesh; Cristina Gervasini; Gabriele Gillessen-Kaesbach; Yiran Guo; Hakon Hakonarson; Robert J Hopkin; Maninder Kaur; Brendan J Keating; María Kibaek; Esther Kinning; Tjitske Kleefstra; Antonie D Kline; Ekaterina Kuchinskaya; Lidia Larizza; Yun R Li; Xuanzhu Liu; Milena Mariani; Jonathan D Picker; Ángeles Pié; Jelena Pozojevic; Ethel Queralt; Julie Richer; Elizabeth Roeder; Anubha Sinha; Richard H Scott; Joyce So; Katherine A Wusik; Louise Wilson; Jianguo Zhang; Paulino Gómez-Puertas; César H Casale; Lena Ström; Angelo Selicorni; Feliciano J Ramos; Laird G Jackson; Ian D Krantz; Soma Das; Raoul C M Hennekam; Frank J Kaiser; David R FitzPatrick; Juan Pié
Journal:  Hum Mutat       Date:  2015-03-17       Impact factor: 4.878

9.  A conserved domain in the scc3 subunit of cohesin mediates the interaction with both mcd1 and the cohesin loader complex.

Authors:  Ola Orgil; Avi Matityahu; Thomas Eng; Vincent Guacci; Douglas Koshland; Itay Onn
Journal:  PLoS Genet       Date:  2015-03-06       Impact factor: 5.917

10.  Tuned SMC Arms Drive Chromosomal Loading of Prokaryotic Condensin.

Authors:  Frank Bürmann; Alrun Basfeld; Roberto Vazquez Nunez; Marie-Laure Diebold-Durand; Larissa Wilhelm; Stephan Gruber
Journal:  Mol Cell       Date:  2017-02-23       Impact factor: 17.970

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  10 in total

Review 1.  Condensins and cohesins - one of these things is not like the other!

Authors:  Robert V Skibbens
Journal:  J Cell Sci       Date:  2019-02-07       Impact factor: 5.285

2.  Braiding topology and the energy landscape of chromosome organization proteins.

Authors:  Dana Krepel; Aram Davtyan; Nicholas P Schafer; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-30       Impact factor: 11.205

Review 3.  Unraveling quiescence-specific repressive chromatin domains.

Authors:  Sarah G Swygert; Toshio Tsukiyama
Journal:  Curr Genet       Date:  2019-05-04       Impact factor: 3.886

Review 4.  Recruitment, loading, and activation of the Smc5-Smc6 SUMO ligase.

Authors:  Martina Oravcová; Michael N Boddy
Journal:  Curr Genet       Date:  2019-01-02       Impact factor: 3.886

5.  Interaction of the Saccharomyces cerevisiae RING-domain protein Nse1 with Nse3 and the Smc5/6 complex is required for chromosome replication and stability.

Authors:  Saima Wani; Neelam Maharshi; Deepash Kothiwal; Lakshmi Mahendrawada; Raju Kalaivani; Shikha Laloraya
Journal:  Curr Genet       Date:  2017-11-08       Impact factor: 3.886

6.  Monomeric cohesin state revealed by live-cell single-molecule spectroscopy.

Authors:  Wenjie Liu; Elisheva Biton; Anjali Pathania; Avi Matityahu; Joseph Irudayaraj; Itay Onn
Journal:  EMBO Rep       Date:  2019-12-29       Impact factor: 8.807

7.  A Rubisco-binding protein is required for normal pyrenoid number and starch sheath morphology in Chlamydomonas reinhardtii.

Authors:  Alan K Itakura; Kher Xing Chan; Nicky Atkinson; Leif Pallesen; Lianyong Wang; Gregory Reeves; Weronika Patena; Oliver Caspari; Robyn Roth; Ursula Goodenough; Alistair J McCormick; Howard Griffiths; Martin C Jonikas
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-27       Impact factor: 11.205

Review 8.  MORC protein family-related signature within human disease and cancer.

Authors:  Huan Wang; Ling Zhang; Qiuhua Luo; Jia Liu; Guiling Wang
Journal:  Cell Death Dis       Date:  2021-11-27       Impact factor: 8.469

Review 9.  Decoding the role of coiled-coil motifs in human prion-like proteins.

Authors:  Molood Behbahanipour; Javier García-Pardo; Salvador Ventura
Journal:  Prion       Date:  2021-12       Impact factor: 3.931

10.  Cohesin ATPase activities regulate DNA binding and coiled-coil configuration.

Authors:  Xingya Xu; Ryuta Kanai; Li Wang; Mitsuhiro Yanagida
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-08       Impact factor: 12.779

  10 in total

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