Literature DB >> 27775714

Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2.

Xiaozhe Xiong1, Tatyana Panchenko2, Shuang Yang1, Shuai Zhao1, Peiqiang Yan1,3, Wenhao Zhang3,4, Wei Xie3,4, Yuanyuan Li1,4, Yingming Zhao5, C David Allis2, Haitao Li1,4,6.   

Abstract

Recognition of histone covalent modifications by 'reader' modules constitutes a major mechanism for epigenetic regulation. A recent upsurge of newly discovered histone lysine acylations, such as crotonylation (Kcr), butyrylation (Kbu), and propionylation (Kpr), greatly expands the coding potential of histone lysine modifications. Here we demonstrate that the histone acetylation-binding double PHD finger (DPF) domains of human MOZ (also known as KAT6A) and DPF2 (also known as BAF45d) accommodate a wide range of histone lysine acylations with the strongest preference for Kcr. Crystal structures of the DPF domain of MOZ in complex with H3K14cr, H3K14bu, and H3K14pr peptides reveal that these non-acetyl acylations are anchored in a hydrophobic 'dead-end' pocket with selectivity for crotonylation arising from intimate encapsulation and an amide-sensing hydrogen bonding network. Immunofluorescence and chromatin immunoprecipitation (ChIP)-quantitative PCR (qPCR) showed that MOZ and H3K14cr colocalize in a DPF-dependent manner. Our studies call attention to a new regulatory mechanism centered on histone crotonylation readout by DPF family members.

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Year:  2016        PMID: 27775714      PMCID: PMC5253430          DOI: 10.1038/nchembio.2218

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  45 in total

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Authors:  Yuanyuan Li; Haitao Li
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2012-01       Impact factor: 3.848

Review 2.  50 years of protein acetylation: from gene regulation to epigenetics, metabolism and beyond.

Authors:  Eric Verdin; Melanie Ott
Journal:  Nat Rev Mol Cell Biol       Date:  2014-12-30       Impact factor: 94.444

Review 3.  The MOZ histone acetyltransferase in epigenetic signaling and disease.

Authors:  Samuel Carlson; Karen C Glass
Journal:  J Cell Physiol       Date:  2014-11       Impact factor: 6.384

4.  Activation of the protein deacetylase SIRT6 by long-chain fatty acids and widespread deacylation by mammalian sirtuins.

Authors:  Jessica L Feldman; Josue Baeza; John M Denu
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

Review 5.  MOZ and MORF acetyltransferases: Molecular interaction, animal development and human disease.

Authors:  Xiang-Jiao Yang
Journal:  Biochim Biophys Acta       Date:  2015-04-25

6.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

7.  Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions.

Authors:  Alexander J Ruthenburg; Haitao Li; Thomas A Milne; Scott Dewell; Robert K McGinty; Melanie Yuen; Beatrix Ueberheide; Yali Dou; Tom W Muir; Dinshaw J Patel; C David Allis
Journal:  Cell       Date:  2011-05-19       Impact factor: 41.582

8.  AF9 YEATS domain links histone acetylation to DOT1L-mediated H3K79 methylation.

Authors:  Yuanyuan Li; Hong Wen; Yuanxin Xi; Kaori Tanaka; Haibo Wang; Danni Peng; Yongfeng Ren; Qihuang Jin; Sharon Y R Dent; Wei Li; Haitao Li; Xiaobing Shi
Journal:  Cell       Date:  2014-10-23       Impact factor: 41.582

9.  The double PHD finger domain of MOZ/MYST3 induces α-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification.

Authors:  Ingrid Dreveny; Sian E Deeves; Joel Fulton; Baigong Yue; Marie Messmer; Amit Bhattacharya; Hilary M Collins; David M Heery
Journal:  Nucleic Acids Res       Date:  2013-10-22       Impact factor: 16.971

10.  SWI/SNF Subunits SMARCA4, SMARCD2 and DPF2 Collaborate in MLL-Rearranged Leukaemia Maintenance.

Authors:  V Adam Cruickshank; Patrycja Sroczynska; Aditya Sankar; Satoru Miyagi; Carsten Friis Rundsten; Jens Vilstrup Johansen; Kristian Helin
Journal:  PLoS One       Date:  2015-11-16       Impact factor: 3.240

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  56 in total

1.  Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology.

Authors:  Shuai Zhao; Mo Yang; Wenfei Zhou; Baichao Zhang; Zhiqiang Cheng; Jiaxin Huang; Min Zhang; Zhiyou Wang; Rui Wang; Zhonglei Chen; Jinsong Zhu; Haitao Li
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

2.  Class I histone deacetylases are major histone decrotonylases: evidence for critical and broad function of histone crotonylation in transcription.

Authors:  Wei Wei; Xiaoguang Liu; Jiwei Chen; Shennan Gao; Lu Lu; Huifang Zhang; Guangjin Ding; Zhiqiang Wang; Zhongzhou Chen; Tieliu Shi; Jiwen Li; Jianjun Yu; Jiemin Wong
Journal:  Cell Res       Date:  2017-05-12       Impact factor: 25.617

3.  Mutations in the BAF-Complex Subunit DPF2 Are Associated with Coffin-Siris Syndrome.

Authors:  Georgia Vasileiou; Silvia Vergarajauregui; Sabine Endele; Bernt Popp; Christian Büttner; Arif B Ekici; Marion Gerard; Nuria C Bramswig; Beate Albrecht; Jill Clayton-Smith; Jenny Morton; Susan Tomkins; Karen Low; Astrid Weber; Maren Wenzel; Janine Altmüller; Yun Li; Bernd Wollnik; George Hoganson; Maria-Renée Plona; Megan T Cho; Christian T Thiel; Hermann-Josef Lüdecke; Tim M Strom; Eduardo Calpena; Andrew O M Wilkie; Dagmar Wieczorek; Felix B Engel; André Reis
Journal:  Am J Hum Genet       Date:  2018-02-08       Impact factor: 11.025

4.  Histone-binding of DPF2 mediates its repressive role in myeloid differentiation.

Authors:  Ferdinand M Huber; Sarah M Greenblatt; Andrew M Davenport; Concepcion Martinez; Ye Xu; Ly P Vu; Stephen D Nimer; André Hoelz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

Review 5.  Unwinding chromatin at the right places: how BAF is targeted to specific genomic locations during development.

Authors:  Patric J Ho; Sarah M Lloyd; Xiaomin Bao
Journal:  Development       Date:  2019-09-30       Impact factor: 6.868

6.  Recognition of Histone H3K14 Acylation by MORF.

Authors:  Brianna J Klein; Johayra Simithy; Xiaolu Wang; JaeWoo Ahn; Forest H Andrews; Yi Zhang; Jacques Côté; Xiaobing Shi; Benjamin A Garcia; Tatiana G Kutateladze
Journal:  Structure       Date:  2017-03-09       Impact factor: 5.006

7.  Characteristics of a PHD Finger Subtype.

Authors:  Daniel Boamah; Tao Lin; Franchesca A Poppinga; Shraddha Basu; Shahariar Rahman; Francisca Essel; Suvobrata Chakravarty
Journal:  Biochemistry       Date:  2018-01-05       Impact factor: 3.162

Review 8.  The evolving metabolic landscape of chromatin biology and epigenetics.

Authors:  Ziwei Dai; Vijyendra Ramesh; Jason W Locasale
Journal:  Nat Rev Genet       Date:  2020-09-09       Impact factor: 53.242

9.  A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms.

Authors:  Nazar Mashtalir; Hiroshi Suzuki; Daniel P Farrell; Akshay Sankar; Jie Luo; Martin Filipovski; Andrew R D'Avino; Roodolph St Pierre; Alfredo M Valencia; Takashi Onikubo; Robert G Roeder; Yan Han; Yuan He; Jeffrey A Ranish; Frank DiMaio; Thomas Walz; Cigall Kadoch
Journal:  Cell       Date:  2020-10-13       Impact factor: 41.582

10.  Multi-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes.

Authors:  Marion Crespo; Annelaure Damont; Melina Blanco; Emmanuelle Lastrucci; Sara El Kennani; Côme Ialy-Radio; Laila El Khattabi; Samuel Terrier; Mathilde Louwagie; Sylvie Kieffer-Jaquinod; Anne-Marie Hesse; Christophe Bruley; Sophie Chantalat; Jérôme Govin; François Fenaille; Christophe Battail; Julie Cocquet; Delphine Pflieger
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

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