Literature DB >> 22194011

Many keys to push: diversifying the 'readership' of plant homeodomain fingers.

Yuanyuan Li1, Haitao Li.   

Abstract

Covalent histone modifications-referred to as the 'histone code', are recognized by a wealth of effector or 'reader' modules, representing one of the most fundamental epigenetic regulatory mechanisms that govern the structure and function of our genome. Recent progresses on combinatorial readout of such 'histone code' promote us to reconsider epigenetic regulation as a more complicated theme than we originally anticipated. In particular, plant homeodomain (PHD) fingers, which are evolved with fine-tuned residue composition and integrated or paired with other reader modules, display remarkably diverse 'readership' other than its founding-member target, histone H3 trimethylation on lysine 4 (H3K4me3). In this review, we detail the latest progresses of PHD finger research, especially from the perspective of structural biology, and highlight the versatile binding features and biological significance of PHD fingers.

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Year:  2012        PMID: 22194011     DOI: 10.1093/abbs/gmr117

Source DB:  PubMed          Journal:  Acta Biochim Biophys Sin (Shanghai)        ISSN: 1672-9145            Impact factor:   3.848


  29 in total

Review 1.  PHDs govern plant development.

Authors:  Alfonso Mouriz; Leticia López-González; Jose A Jarillo; Manuel Piñeiro
Journal:  Plant Signal Behav       Date:  2015

2.  Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.

Authors:  Lian-Mei Tan; Rui Liu; Bo-Wen Gu; Cui-Jun Zhang; Jinyan Luo; Jing Guo; Yuhua Wang; Lixian Chen; Xuan Du; Sisi Li; Chang-Rong Shao; Yin-Na Su; Xue-Wei Cai; Rong-Nan Lin; Lin Li; She Chen; Jiamu Du; Xin-Jian He
Journal:  Plant Cell       Date:  2020-04-30       Impact factor: 11.277

3.  Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology.

Authors:  Shuai Zhao; Mo Yang; Wenfei Zhou; Baichao Zhang; Zhiqiang Cheng; Jiaxin Huang; Min Zhang; Zhiyou Wang; Rui Wang; Zhonglei Chen; Jinsong Zhu; Haitao Li
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

4.  NMR structure note: PHD domain from death inducer obliterator protein and its interaction with H3K4me3.

Authors:  Clara M Santiveri; M Flor García-Mayoral; José M Pérez-Cañadillas; M Angeles Jiménez
Journal:  J Biomol NMR       Date:  2013-04-12       Impact factor: 2.835

Review 5.  The MOZ histone acetyltransferase in epigenetic signaling and disease.

Authors:  Samuel Carlson; Karen C Glass
Journal:  J Cell Physiol       Date:  2014-11       Impact factor: 6.384

6.  A Histone Code Reader and a Transcriptional Activator Interact to Regulate Genes for Salt Tolerance.

Authors:  Wei Wei; Jian-Jun Tao; Hao-Wei Chen; Qing-Tian Li; Wan-Ke Zhang; Biao Ma; Qing Lin; Jin-Song Zhang; Shou-Yi Chen
Journal:  Plant Physiol       Date:  2017-09-05       Impact factor: 8.340

7.  Characterization of the Drosophila group ortholog to the amino-terminus of the alpha-thalassemia and mental retardation X-Linked (ATRX) vertebrate protein.

Authors:  Brenda López-Falcón; Silvia Meyer-Nava; Benjamín Hernández-Rodríguez; Adam Campos; Daniel Montero; Enrique Rudiño; Martha Vázquez; Mario Zurita; Viviana Valadez-Graham
Journal:  PLoS One       Date:  2014-12-01       Impact factor: 3.240

8.  Structural and functional insights into the human Börjeson-Forssman-Lehmann syndrome-associated protein PHF6.

Authors:  Zhonghua Liu; Fudong Li; Ke Ruan; Jiahai Zhang; Yide Mei; Jihui Wu; Yunyu Shi
Journal:  J Biol Chem       Date:  2014-02-19       Impact factor: 5.157

9.  Multifaceted Histone H3 Methylation and Phosphorylation Readout by the Plant Homeodomain Finger of Human Nuclear Antigen Sp100C.

Authors:  Xiaojie Zhang; Dan Zhao; Xiaozhe Xiong; Zhimin He; Haitao Li
Journal:  J Biol Chem       Date:  2016-04-22       Impact factor: 5.157

Review 10.  Structural biology-based insights into combinatorial readout and crosstalk among epigenetic marks.

Authors:  Jiamu Du; Dinshaw J Patel
Journal:  Biochim Biophys Acta       Date:  2014-04-18
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