Literature DB >> 31570369

Unwinding chromatin at the right places: how BAF is targeted to specific genomic locations during development.

Patric J Ho1, Sarah M Lloyd1, Xiaomin Bao2,3,4.   

Abstract

The BAF (SWI/SNF) chromatin remodeling complex plays a crucial role in modulating spatiotemporal gene expression during mammalian development. Although its remodeling activity was characterized in vitro decades ago, the complex actions of BAF in vivo have only recently begun to be unraveled. In living cells, BAF only binds to and remodels a subset of genomic locations. This selectivity of BAF genomic targeting is crucial for cell-type specification and for mediating precise responses to environmental signals. Here, we provide an overview of the distinct molecular mechanisms modulating BAF chromatin binding, including its combinatory assemblies, DNA/histone modification-binding modules and post-translational modifications, as well as its interactions with proteins, RNA and lipids. This Review aims to serve as a primer for future studies to decode the actions of BAF in developmental processes.
© 2019. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  BAF; Chromatin; DNA; Histone; RNA; SWI/SNF; Transcription factor

Year:  2019        PMID: 31570369      PMCID: PMC6803370          DOI: 10.1242/dev.178780

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  134 in total

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Authors:  Heidi L Schubert; Jacqueline Wittmeyer; Margaret M Kasten; Kaede Hinata; David C Rawling; Annie Héroux; Bradley R Cairns; Christopher P Hill
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-11       Impact factor: 11.205

2.  Discovery of I-BRD9, a Selective Cell Active Chemical Probe for Bromodomain Containing Protein 9 Inhibition.

Authors:  Natalie H Theodoulou; Paul Bamborough; Andrew J Bannister; Isabelle Becher; Rino A Bit; Ka Hing Che; Chun-wa Chung; Antje Dittmann; Gerard Drewes; David H Drewry; Laurie Gordon; Paola Grandi; Melanie Leveridge; Matthew Lindon; Anne-Marie Michon; Judit Molnar; Samuel C Robson; Nicholas C O Tomkinson; Tony Kouzarides; Rab K Prinjha; Philip G Humphreys
Journal:  J Med Chem       Date:  2015-04-30       Impact factor: 7.446

3.  Genetic analysis of brahma: the Drosophila homolog of the yeast chromatin remodeling factor SWI2/SNF2.

Authors:  L K Elfring; C Daniel; O Papoulas; R Deuring; M Sarte; S Moseley; S J Beek; W R Waldrip; G Daubresse; A DePace; J A Kennison; J W Tamkun
Journal:  Genetics       Date:  1998-01       Impact factor: 4.562

4.  ARID1A, a factor that promotes formation of SWI/SNF-mediated chromatin remodeling, is a tumor suppressor in gynecologic cancers.

Authors:  Bin Guan; Tian-Li Wang; Ie-Ming Shih
Journal:  Cancer Res       Date:  2011-09-07       Impact factor: 12.701

5.  Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells.

Authors:  Patrick Laurette; Thomas Strub; Dana Koludrovic; Céline Keime; Stéphanie Le Gras; Hannah Seberg; Eric Van Otterloo; Hana Imrichova; Robert Siddaway; Stein Aerts; Robert A Cornell; Gabrielle Mengus; Irwin Davidson
Journal:  Elife       Date:  2015-03-24       Impact factor: 8.140

6.  A long noncoding RNA protects the heart from pathological hypertrophy.

Authors:  Wei Li; Chiou-Hong Lin; Pei Han; Jin Yang; Ching Shang; Sylvia T Nuernberg; Kevin Kai Jin; Weihong Xu; Chieh-Yu Lin; Chien-Jung Lin; Yiqin Xiong; Huanchieh Chien; Bin Zhou; Euan Ashley; Daniel Bernstein; Peng-Sheng Chen; Huei-Sheng Vincent Chen; Thomas Quertermous; Ching-Pin Chang
Journal:  Nature       Date:  2014-08-10       Impact factor: 49.962

7.  Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF.

Authors:  Sarah J Hainer; Weifeng Gu; Benjamin R Carone; Benjamin D Landry; Oliver J Rando; Craig C Mello; Thomas G Fazzio
Journal:  Genes Dev       Date:  2015-02-15       Impact factor: 11.361

8.  A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells.

Authors:  Jovylyn Gatchalian; Shivani Malik; Josephine Ho; Dong-Sung Lee; Timothy W R Kelso; Maxim N Shokhirev; Jesse R Dixon; Diana C Hargreaves
Journal:  Nat Commun       Date:  2018-12-03       Impact factor: 14.919

9.  Vitamin D Switches BAF Complexes to Protect β Cells.

Authors:  Zong Wei; Eiji Yoshihara; Nanhai He; Nasun Hah; Weiwei Fan; Antonio F M Pinto; Timothy Huddy; Yuhao Wang; Brittany Ross; Gabriela Estepa; Yang Dai; Ning Ding; Mara H Sherman; Sungsoon Fang; Xuan Zhao; Christopher Liddle; Annette R Atkins; Ruth T Yu; Michael Downes; Ronald M Evans
Journal:  Cell       Date:  2018-05-10       Impact factor: 41.582

10.  Selective targeting of the BRG/PB1 bromodomains impairs embryonic and trophoblast stem cell maintenance.

Authors:  Oleg Fedorov; Josefina Castex; Cynthia Tallant; Dafydd R Owen; Sarah Martin; Matteo Aldeghi; Octovia Monteiro; Panagis Filippakopoulos; Sarah Picaud; John D Trzupek; Brian S Gerstenberger; Chas Bountra; Dominica Willmann; Christopher Wells; Martin Philpott; Catherine Rogers; Philip C Biggin; Paul E Brennan; Mark E Bunnage; Roland Schüle; Thomas Günther; Stefan Knapp; Susanne Müller
Journal:  Sci Adv       Date:  2015-11-13       Impact factor: 14.136

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  7 in total

1.  Structure of human chromatin-remodelling PBAF complex bound to a nucleosome.

Authors:  Junjie Yuan; Kangjing Chen; Wenbo Zhang; Zhucheng Chen
Journal:  Nature       Date:  2022-04-27       Impact factor: 49.962

2.  Chromatin remodelling complexes in cerebral cortex development and neurodevelopmental disorders.

Authors:  Leora D'Souza; Asha S Channakkar; Bhavana Muralidharan
Journal:  Neurochem Int       Date:  2021-05-06       Impact factor: 3.921

3.  Temporal mechanisms of myogenic specification in human induced pluripotent stem cells.

Authors:  P Nayak; A Colas; M Mercola; S Varghese; S Subramaniam
Journal:  Sci Adv       Date:  2021-03-17       Impact factor: 14.136

4.  Interplay of BAF and MLL4 promotes cell type-specific enhancer activation.

Authors:  Young-Kwon Park; Ji-Eun Lee; Zhijiang Yan; Kaitlin McKernan; Tommy O'Haren; Weidong Wang; Weiqun Peng; Kai Ge
Journal:  Nat Commun       Date:  2021-03-12       Impact factor: 14.919

5.  Bromodomain-containing subunits BRD1, BRD2, and BRD13 are required for proper functioning of SWI/SNF complexes in Arabidopsis.

Authors:  Kamila Jarończyk; Katarzyna Sosnowska; Adam Zaborowski; Piotr Pupel; Maria Bucholc; Ewelina Małecka; Nina Siwirykow; Paulina Stachula; Roksana Iwanicka-Nowicka; Marta Koblowska; Andrzej Jerzmanowski; Rafał Archacki
Journal:  Plant Commun       Date:  2021-03-05

Review 6.  The epigenomics of sarcoma.

Authors:  Benjamin A Nacev; Kevin B Jones; Andrew M Intlekofer; Jamie S E Yu; C David Allis; William D Tap; Marc Ladanyi; Torsten O Nielsen
Journal:  Nat Rev Cancer       Date:  2020-08-11       Impact factor: 69.800

7.  Nuclear export restricts Gdown1 to a mitotic function.

Authors:  Christopher B Ball; Mrutyunjaya Parida; Juan F Santana; Benjamin M Spector; Gustavo A Suarez; David H Price
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

  7 in total

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