Literature DB >> 28533407

Histone-binding of DPF2 mediates its repressive role in myeloid differentiation.

Ferdinand M Huber1, Sarah M Greenblatt2, Andrew M Davenport1, Concepcion Martinez2, Ye Xu2, Ly P Vu3, Stephen D Nimer4, André Hoelz5.   

Abstract

Double plant homeodomain finger 2 (DPF2) is a highly evolutionarily conserved member of the d4 protein family that is ubiquitously expressed in human tissues and was recently shown to inhibit the myeloid differentiation of hematopoietic stem/progenitor and acute myelogenous leukemia cells. Here, we present the crystal structure of the tandem plant homeodomain finger domain of human DPF2 at 1.6-Å resolution. We show that DPF2 interacts with the acetylated tails of both histones 3 and 4 via bipartite binding pockets on the DPF2 surface. Blocking these interactions through targeted mutagenesis of DPF2 abolishes its recruitment to target chromatin regions as well as its ability to prevent myeloid differentiation in vivo. Our findings suggest that the histone binding of DPF2 plays an important regulatory role in the transcriptional program that drives myeloid differentiation.

Entities:  

Keywords:  X-ray crystallography; isothermal titration calorimetry; myeloid differentiation; protein–protein interaction; tandem PHD finger

Mesh:

Substances:

Year:  2017        PMID: 28533407      PMCID: PMC5468650          DOI: 10.1073/pnas.1700328114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Identification of NUP98 abnormalities in acute leukemia: JARID1A (12p13) as a new partner gene.

Authors:  Laura J C M van Zutven; Emine Onen; Sandra C J M Velthuizen; Ellen van Drunen; Anne R M von Bergh; Marry M van den Heuvel-Eibrink; Angelo Veronese; Cristina Mecucci; Massimo Negrini; Georgine E de Greef; H Berna Beverloo
Journal:  Genes Chromosomes Cancer       Date:  2006-05       Impact factor: 5.006

Review 2.  [D4 family genes in vertebrates: genomic organization and expression].

Authors:  D A Kulikova; I B Mertsalov; O B Simonova
Journal:  Ontogenez       Date:  2013 Jan-Feb

3.  Proteomic analysis of progressive factors in uterine cervical cancer.

Authors:  Yoon Pyo Choi; Suki Kang; Sunghee Hong; Xianhe Xie; Nam Hoon Cho
Journal:  Proteomics       Date:  2005-04       Impact factor: 3.984

4.  Structure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor.

Authors:  J Pascual; M Martinez-Yamout; H J Dyson; P E Wright
Journal:  J Mol Biol       Date:  2000-12-15       Impact factor: 5.469

5.  CARM1 methylates chromatin remodeling factor BAF155 to enhance tumor progression and metastasis.

Authors:  Lu Wang; Zibo Zhao; Mark B Meyer; Sandeep Saha; Menggang Yu; Ailan Guo; Kari B Wisinski; Wei Huang; Weibo Cai; J Wesley Pike; Ming Yuan; Paul Ahlquist; Wei Xu
Journal:  Cancer Cell       Date:  2014-01-13       Impact factor: 31.743

6.  BET bromodomain inhibition targets both c-Myc and IL7R in high-risk acute lymphoblastic leukemia.

Authors:  Christopher J Ott; Nadja Kopp; Liat Bird; Ronald M Paranal; Jun Qi; Teresa Bowman; Scott J Rodig; Andrew L Kung; James E Bradner; David M Weinstock
Journal:  Blood       Date:  2012-08-17       Impact factor: 22.113

7.  Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b.

Authors:  Lei Zeng; Qiang Zhang; Side Li; Alexander N Plotnikov; Martin J Walsh; Ming-Ming Zhou
Journal:  Nature       Date:  2010-07-08       Impact factor: 49.962

8.  COSMIC: exploring the world's knowledge of somatic mutations in human cancer.

Authors:  Simon A Forbes; David Beare; Prasad Gunasekaran; Kenric Leung; Nidhi Bindal; Harry Boutselakis; Minjie Ding; Sally Bamford; Charlotte Cole; Sari Ward; Chai Yin Kok; Mingming Jia; Tisham De; Jon W Teague; Michael R Stratton; Ultan McDermott; Peter J Campbell
Journal:  Nucleic Acids Res       Date:  2014-10-29       Impact factor: 16.971

9.  Staufen1-mediated mRNA decay induces Requiem mRNA decay through binding of Staufen1 to the Requiem 3'UTR.

Authors:  Min Young Kim; Jungyun Park; Jong Joo Lee; Dae Hyun Ha; Jonghwan Kim; Chan Gil Kim; Jungwook Hwang; Chul Geun Kim
Journal:  Nucleic Acids Res       Date:  2014-05-05       Impact factor: 16.971

10.  Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.

Authors:  Gang G Wang; Jikui Song; Zhanxin Wang; Holger L Dormann; Fabio Casadio; Haitao Li; Jun-Li Luo; Dinshaw J Patel; C David Allis
Journal:  Nature       Date:  2009-06-11       Impact factor: 49.962

View more
  10 in total

1.  Mutations in the BAF-Complex Subunit DPF2 Are Associated with Coffin-Siris Syndrome.

Authors:  Georgia Vasileiou; Silvia Vergarajauregui; Sabine Endele; Bernt Popp; Christian Büttner; Arif B Ekici; Marion Gerard; Nuria C Bramswig; Beate Albrecht; Jill Clayton-Smith; Jenny Morton; Susan Tomkins; Karen Low; Astrid Weber; Maren Wenzel; Janine Altmüller; Yun Li; Bernd Wollnik; George Hoganson; Maria-Renée Plona; Megan T Cho; Christian T Thiel; Hermann-Josef Lüdecke; Tim M Strom; Eduardo Calpena; Andrew O M Wilkie; Dagmar Wieczorek; Felix B Engel; André Reis
Journal:  Am J Hum Genet       Date:  2018-02-08       Impact factor: 11.025

2.  Chromatin landscape signals differentially dictate the activities of mSWI/SNF family complexes.

Authors:  Nazar Mashtalir; Hai T Dao; Akshay Sankar; Hengyuan Liu; Aaron J Corin; John D Bagert; Eva J Ge; Andrew R D'Avino; Martin Filipovski; Brittany C Michel; Geoffrey P Dann; Tom W Muir; Cigall Kadoch
Journal:  Science       Date:  2021-07-16       Impact factor: 63.714

3.  HBO1 is required for the maintenance of leukaemia stem cells.

Authors:  Laura MacPherson; Juliana Anokye; Miriam M Yeung; Enid Y N Lam; Yih-Chih Chan; Chen-Fang Weng; Paul Yeh; Kathy Knezevic; Miriam S Butler; Annabelle Hoegl; Kah-Lok Chan; Marian L Burr; Linden J Gearing; Tracy Willson; Joy Liu; Jarny Choi; Yuqing Yang; Rebecca A Bilardi; Hendrik Falk; Nghi Nguyen; Paul A Stupple; Thomas S Peat; Ming Zhang; Melanie de Silva; Catalina Carrasco-Pozo; Vicky M Avery; Poh Sim Khoo; Olan Dolezal; Matthew L Dennis; Stewart Nuttall; Regina Surjadi; Janet Newman; Bin Ren; David J Leaver; Yuxin Sun; Jonathan B Baell; Oliver Dovey; George S Vassiliou; Florian Grebien; Sarah-Jane Dawson; Ian P Street; Brendon J Monahan; Christopher J Burns; Chunaram Choudhary; Marnie E Blewitt; Anne K Voss; Tim Thomas; Mark A Dawson
Journal:  Nature       Date:  2019-12-11       Impact factor: 49.962

Review 4.  The language of chromatin modification in human cancers.

Authors:  Shuai Zhao; C David Allis; Gang Greg Wang
Journal:  Nat Rev Cancer       Date:  2021-05-17       Impact factor: 60.716

5.  Characterization of the plant homeodomain (PHD) reader family for their histone tail interactions.

Authors:  Kanishk Jain; Caroline S Fraser; Matthew R Marunde; Madison M Parker; Cari Sagum; Jonathan M Burg; Nathan Hall; Irina K Popova; Keli L Rodriguez; Anup Vaidya; Krzysztof Krajewski; Michael-Christopher Keogh; Mark T Bedford; Brian D Strahl
Journal:  Epigenetics Chromatin       Date:  2020-01-24       Impact factor: 4.954

6.  The DPF Domain As a Unique Structural Unit Participating in Transcriptional Activation, Cell Differentiation, and Malignant Transformation.

Authors:  N V Soshnikova; A A Sheynov; Eu V Tatarskiy; S G Georgieva
Journal:  Acta Naturae       Date:  2020 Oct-Dec       Impact factor: 1.845

7.  Identification of microRNA Signature and Key Genes Between Adenoma and Adenocarcinomas Using Bioinformatics Analysis.

Authors:  Xinya Shi; Guang Yu Gao; Jiaofeng Shen
Journal:  Onco Targets Ther       Date:  2021-09-04       Impact factor: 4.147

Review 8.  Conserved Structure and Evolution of DPF Domain of PHF10-The Specific Subunit of PBAF Chromatin Remodeling Complex.

Authors:  Anton O Chugunov; Nadezhda A Potapova; Natalia S Klimenko; Victor V Tatarskiy; Sofia G Georgieva; Nataliya V Soshnikova
Journal:  Int J Mol Sci       Date:  2021-10-15       Impact factor: 5.923

Review 9.  Small Molecules Targeting the Specific Domains of Histone-Mark Readers in Cancer Therapy.

Authors:  Huihui Zhu; Tao Wei; Yong Cai; Jingji Jin
Journal:  Molecules       Date:  2020-01-29       Impact factor: 4.411

10.  Intrinsic Disorder of the BAF Complex: Roles in Chromatin Remodeling and Disease Development.

Authors:  Nashwa El Hadidy; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2019-10-23       Impact factor: 5.923

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.