Literature DB >> 27768305

Self-Assembly of Catenanes from Lasso Peptides.

Caitlin D Allen1, A James Link1.   

Abstract

Lasso peptides exist naturally in a threaded state as [1]rotaxanes, and we reasoned that lasso peptides cleaved in their loop region could serve as building blocks for catenanes. Mutagenesis of the lasso peptide microcin J25 (MccJ25) with two cysteine residues followed by cleavage of the peptide with trypsin led to a [2]rotaxane structure that self-assembled into a [3]catenane and [4]catenanes at room temperature in aqueous solution. The [3]catenane represents the smallest ring size of a catenane composed solely of polypeptide segments. The NMR structure of the [3]catenane was determined, suggesting that burial of hydrophobic residues may be a driving force for assembly of the catenane structure.

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Year:  2016        PMID: 27768305      PMCID: PMC5245162          DOI: 10.1021/jacs.6b09454

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  33 in total

1.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

2.  Automated NMR structure calculation with CYANA.

Authors:  Peter Güntert
Journal:  Methods Mol Biol       Date:  2004

3.  Geometry-based flexible and symmetric protein docking.

Authors:  Dina Schneidman-Duhovny; Yuval Inbar; Ruth Nussinov; Haim J Wolfson
Journal:  Proteins       Date:  2005-08-01

4.  Discovery of a thermophilic protein complex stabilized by topologically interlinked chains.

Authors:  Daniel R Boutz; Duilio Cascio; Julian Whitelegge; L Jeanne Perry; Todd O Yeates
Journal:  J Mol Biol       Date:  2007-03-06       Impact factor: 5.469

5.  Construction of a structurally defined double-stranded DNA catenane.

Authors:  Thorsten L Schmidt; Alexander Heckel
Journal:  Nano Lett       Date:  2011-03-16       Impact factor: 11.189

Review 6.  Lasso peptides: an intriguing class of bacterial natural products.

Authors:  Julian D Hegemann; Marcel Zimmermann; Xiulan Xie; Mohamed A Marahiel
Journal:  Acc Chem Res       Date:  2015-06-16       Impact factor: 22.384

7.  13C NMR chemical shifts can predict disulfide bond formation.

Authors:  D Sharma; K Rajarathnam
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

8.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

9.  Structure of thermolysin cleaved microcin J25: extreme stability of a two-chain antimicrobial peptide devoid of covalent links.

Authors:  K Johan Rosengren; Alain Blond; Carlos Afonso; Jean-Claude Tabet; Sylvie Rebuffat; David J Craik
Journal:  Biochemistry       Date:  2004-04-27       Impact factor: 3.162

10.  Rotaxanes of cyclic peptides.

Authors:  Vincent Aucagne; David A Leigh; Julia S Lock; Andrew R Thomson
Journal:  J Am Chem Soc       Date:  2006-02-15       Impact factor: 15.419

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  6 in total

1.  Discovery of Ubonodin, an Antimicrobial Lasso Peptide Active against Members of the Burkholderia cepacia Complex.

Authors:  Wai Ling Cheung-Lee; Madison E Parry; Chuhan Zong; Alexis Jaramillo Cartagena; Seth A Darst; Nancy D Connell; Riccardo Russo; A James Link
Journal:  Chembiochem       Date:  2020-01-03       Impact factor: 3.164

Review 2.  How to harness biosynthetic gene clusters of lasso peptides.

Authors:  Shinya Kodani; Kohta Unno
Journal:  J Ind Microbiol Biotechnol       Date:  2020-07-23       Impact factor: 3.346

3.  Lasso Peptide Benenodin-1 Is a Thermally Actuated [1]Rotaxane Switch.

Authors:  Chuhan Zong; Michelle J Wu; Jason Z Qin; A James Link
Journal:  J Am Chem Soc       Date:  2017-07-24       Impact factor: 15.419

4.  Assessing the Flexibility of the Prochlorosin 2.8 Scaffold for Bioengineering Applications.

Authors:  Julian D Hegemann; Silvia C Bobeica; Mark C Walker; Ian R Bothwell; Wilfred A van der Donk
Journal:  ACS Synth Biol       Date:  2019-05-08       Impact factor: 5.110

5.  Synthesis of spiro quasi[1]catenanes and quasi[1]rotaxanes via a templated backfolding strategy.

Authors:  Luuk Steemers; Martin J Wanner; Martin Lutz; Henk Hiemstra; Jan H van Maarseveen
Journal:  Nat Commun       Date:  2017-05-25       Impact factor: 14.919

6.  Dynamic covalent self-assembly of mechanically interlocked molecules solely made from peptides.

Authors:  Hendrik V Schröder; Yi Zhang; A James Link
Journal:  Nat Chem       Date:  2021-08-23       Impact factor: 24.427

  6 in total

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