Literature DB >> 11101221

13C NMR chemical shifts can predict disulfide bond formation.

D Sharma1, K Rajarathnam.   

Abstract

The presence of disulfide bonds can be detected unambiguously only by X-ray crystallography, and otherwise must be inferred by chemical methods. In this study we demonstrate that 13C NMR chemical shifts are diagnostic of disulfide bond formation, and can discriminate between cysteine in the reduced (free) and oxidized (disulfide bonded) state. A database of cysteine 13C C(alpha) and C(beta) chemical shifts was constructed from the BMRB and Sheffield databases, and published journals. Statistical analysis indicated that the C(beta) shift is extremely sensitive to the redox state, and can predict the disulfide-bonded state. Further, chemical shifts in both states occupy distinct clusters as a function of secondary structure in the C(alpha)/C(beta) chemical shift map. On the basis of these results, we provide simple ground rules for predicting the redox state of cysteines; these rules could be used effectively in NMR structure determination, predicting new folds, and in protein folding studies.

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Year:  2000        PMID: 11101221     DOI: 10.1023/a:1008398416292

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  7 in total

1.  C alpha and C beta carbon-13 chemical shifts in proteins from an empirical database.

Authors:  M Iwadate; T Asakura; M P Williamson
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

2.  Conformations of disulfide bridges in proteins.

Authors:  N Srinivasan; R Sowdhamini; C Ramakrishnan; P Balaram
Journal:  Int J Pept Protein Res       Date:  1990-08

3.  Disulfide bond isomerization in BPTI and BPTI(G36S): an NMR study of correlated mobility in proteins.

Authors:  G Otting; E Liepinsh; K Wüthrich
Journal:  Biochemistry       Date:  1993-04-13       Impact factor: 3.162

4.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

5.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

6.  1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects.

Authors:  D S Wishart; C G Bigam; A Holm; R S Hodges; B D Sykes
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

7.  Relationship between nuclear magnetic resonance chemical shift and protein secondary structure.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

  7 in total
  120 in total

1.  CysView: protein classification based on cysteine pairing patterns.

Authors:  Johann Lenffer; Paulo Lai; Wafaa El Mejaber; Asif M Khan; Judice L Y Koh; Paul T J Tan; Seng H Seah; Vladimir Brusic
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Molecular chaperone function of Mia40 triggers consecutive induced folding steps of the substrate in mitochondrial protein import.

Authors:  Lucia Banci; Ivano Bertini; Chiara Cefaro; Lucia Cenacchi; Simone Ciofi-Baffoni; Isabella Caterina Felli; Angelo Gallo; Leonardo Gonnelli; Enrico Luchinat; Dionisia Sideris; Kostas Tokatlidis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-08       Impact factor: 11.205

3.  NMR dynamics of PSE-4 beta-lactamase: an interplay of ps-ns order and mus-ms motions in the active site.

Authors:  Sébastien Morin; Stéphane M Gagné
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

4.  Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.

Authors:  Markus W Voehler; Robert L Eoff; W Hayes McDonald; F Peter Guengerich; Michael P Stone
Journal:  J Biol Chem       Date:  2009-05-05       Impact factor: 5.157

5.  Structural basis for sulfation-dependent self-glycan recognition by the human immune-inhibitory receptor Siglec-8.

Authors:  Johannes M Pröpster; Fan Yang; Said Rabbani; Beat Ernst; Frédéric H-T Allain; Mario Schubert
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-29       Impact factor: 11.205

6.  Functional role of two interhelical disulfide bonds in human Cox17 protein from a structural perspective.

Authors:  Lucia Banci; Ivano Bertini; Chiara Cefaro; Simone Ciofi-Baffoni; Angelo Gallo
Journal:  J Biol Chem       Date:  2011-08-04       Impact factor: 5.157

7.  Refolded recombinant Siglec5 for NMR investigation of complex carbohydrate binding.

Authors:  Adam W Barb; Xu Wang; James H Prestegard
Journal:  Protein Expr Purif       Date:  2013-01-12       Impact factor: 1.650

8.  Monomeric solution structure of the prototypical 'C' chemokine lymphotactin.

Authors:  E S Kuloglu; D R McCaslin; M Kitabwalla; C D Pauza; J L Markley; B F Volkman
Journal:  Biochemistry       Date:  2001-10-23       Impact factor: 3.162

9.  Redox properties of the A-domain of the HMGB1 protein.

Authors:  Debashish Sahu; Priyanka Debnath; Yuki Takayama; Junji Iwahara
Journal:  FEBS Lett       Date:  2008-11-06       Impact factor: 4.124

10.  NMR structure of navel orangeworm moth pheromone-binding protein (AtraPBP1): implications for pH-sensitive pheromone detection.

Authors:  Xianzhong Xu; Wei Xu; Josep Rayo; Yuko Ishida; Walter S Leal; James B Ames
Journal:  Biochemistry       Date:  2010-02-23       Impact factor: 3.162

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