Literature DB >> 15318003

Automated NMR structure calculation with CYANA.

Peter Güntert1.   

Abstract

This chapter gives an introduction to automated nuclear magnetic resonance (NMR) structure calculation with the program CYANA. Given a sufficiently complete list of assigned chemical shifts and one or several lists of cross-peak positions and columns from two-, three-, or four-dimensional nuclear Overhauser effect spectroscopy (NOESY) spectra, the assignment of the NOESY cross-peaks and the three-dimensional structure of the protein in solution can be calculated automatically with CYANA.

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Year:  2004        PMID： 15318003     DOI： 10.1385/1-59259-809-9:353

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  622 in total

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Authors:  Robyn E Mansfield; Catherine A Musselman; Ann H Kwan; Samuel S Oliver; Adam L Garske; Foteini Davrazou; John M Denu; Tatiana G Kutateladze; Joel P Mackay
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3.  Distinct peptide binding specificities of Src homology 3 (SH3) protein domains can be determined by modulation of local energetics across the binding interface.

Authors:  Maryna Gorelik; Alan R Davidson
Journal:  J Biol Chem       Date:  2012-01-25       Impact factor: 5.157

4.  The small hydrophobic protein of the human respiratory syncytial virus forms pentameric ion channels.

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5.  The Salmonella type III secretion system inner rod protein PrgJ is partially folded.

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6.  Unfolding of the C-terminal domain of the J-protein Zuo1 releases autoinhibition and activates Pdr1-dependent transcription.

Authors:  Jeanette K Ducett; Francis C Peterson; Lindsey A Hoover; Amy J Prunuske; Brian F Volkman; Elizabeth A Craig
Journal:  J Mol Biol       Date:  2012-10-02       Impact factor: 5.469

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Authors:  Fahu He; Weirong Dang; Chikage Abe; Kengo Tsuda; Makoto Inoue; Satoru Watanabe; Naohiro Kobayashi; Takanori Kigawa; Takayoshi Matsuda; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takushi Harada; Yuri Tomabechi; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Peter Güntert; Yutaka Muto; Shigeyuki Yokoyama
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8.  Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

Authors:  Kaiming Zhang; Sarah C Keane; Zhaoming Su; Rossitza N Irobalieva; Muyuan Chen; Verna Van; Carly A Sciandra; Jan Marchant; Xiao Heng; Michael F Schmid; David A Case; Steven J Ludtke; Michael F Summers; Wah Chiu
Journal:  Structure       Date:  2018-02-02       Impact factor: 5.006

9.  Matrix metalloproteinase-inhibitor interaction: the solution structure of the catalytic domain of human matrix metalloproteinase-3 with different inhibitors.

Authors:  Luis A Alcaraz; Lucia Banci; Ivano Bertini; Francesca Cantini; Antonio Donaire; Leonardo Gonnelli
Journal:  J Biol Inorg Chem       Date:  2007-08-21       Impact factor: 3.358

10.  Solution structure of the RecQ C-terminal domain of human Bloom syndrome protein.

Authors:  Chin-Ju Park; Junsang Ko; Kyoung-Seok Ryu; Byong-Seok Choi
Journal:  J Biomol NMR       Date:  2014-01-17       Impact factor: 2.835
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