Literature DB >> 27761486

Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy.

Yicong Wu1, Panagiotis Chandris1, Peter W Winter1, Edward Y Kim2, Valentin Jaumouillé3, Abhishek Kumar1, Min Guo4, Jacqueline M Leung5, Corey Smith6, Ivan Rey-Suarez1, Huafeng Liu7, Clare M Waterman3, Kumaran S Ramamurthi2, Patrick J La Riviere8, Hari Shroff9.   

Abstract

Most fluorescence microscopes are inefficient, collecting only a small fraction of the emitted light at any instant. Besides wasting valuable signal, this inefficiency also reduces spatial resolution and causes imaging volumes to exhibit significant resolution anisotropy. We describe microscopic and computational techniques that address these problems by simultaneously capturing and subsequently fusing and deconvolving multiple specimen views. Unlike previous methods that serially capture multiple views, our approach improves spatial resolution without introducing any additional illumination dose or compromising temporal resolution relative to conventional imaging. When applying our methods to single-view wide-field or dual-view light-sheet microscopy, we achieve a twofold improvement in volumetric resolution (~235 nm × 235 nm × 340 nm) as demonstrated on a variety of samples including microtubules in Toxoplasma gondii, SpoVM in sporulating Bacillus subtilis, and multiple protein distributions and organelles in eukaryotic cells. In every case, spatial resolution is improved with no drawback by harnessing previously unused fluorescence.

Entities:  

Year:  2016        PMID: 27761486      PMCID: PMC5066810          DOI: 10.1364/OPTICA.3.000897

Source DB:  PubMed          Journal:  Optica            Impact factor:   11.104


  30 in total

1.  I5M: 3D widefield light microscopy with better than 100 nm axial resolution.

Authors:  M G Gustafsson; D A Agard; J W Sedat
Journal:  J Microsc       Date:  1999-07       Impact factor: 1.758

2.  Whole-animal functional and developmental imaging with isotropic spatial resolution.

Authors:  Raghav K Chhetri; Fernando Amat; Yinan Wan; Burkhard Höckendorf; William C Lemon; Philipp J Keller
Journal:  Nat Methods       Date:  2015-10-26       Impact factor: 28.547

3.  Structural basis for the geometry-driven localization of a small protein.

Authors:  Richard L Gill; Jean-Philippe Castaing; Jen Hsin; Irene S Tan; Xingsheng Wang; Kerwyn Casey Huang; Fang Tian; Kumaran S Ramamurthi
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-30       Impact factor: 11.205

4.  Cytoskeleton of Toxoplasma gondii.

Authors:  B A Nichols; M L Chiappino
Journal:  J Protozool       Date:  1987-05

Review 5.  Microscopy in 3D: a biologist's toolbox.

Authors:  Robert S Fischer; Yicong Wu; Pakorn Kanchanawong; Hari Shroff; Clare M Waterman
Journal:  Trends Cell Biol       Date:  2011-10-31       Impact factor: 20.808

6.  Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths.

Authors:  Maria Ingaramo; Andrew G York; Eelco Hoogendoorn; Marten Postma; Hari Shroff; George H Patterson
Journal:  Chemphyschem       Date:  2014-01-16       Impact factor: 3.102

Review 7.  The Bacillus subtilis endospore: assembly and functions of the multilayered coat.

Authors:  Peter T McKenney; Adam Driks; Patrick Eichenberger
Journal:  Nat Rev Microbiol       Date:  2012-12-03       Impact factor: 60.633

8.  Construction of a cloning site near one end of Tn917 into which foreign DNA may be inserted without affecting transposition in Bacillus subtilis or expression of the transposon-borne erm gene.

Authors:  P Youngman; J B Perkins; R Losick
Journal:  Plasmid       Date:  1984-07       Impact factor: 3.466

9.  Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Authors:  Yicong Wu; Peter Wawrzusin; Justin Senseney; Robert S Fischer; Ryan Christensen; Anthony Santella; Andrew G York; Peter W Winter; Clare M Waterman; Zhirong Bao; Daniel A Colón-Ramos; Matthew McAuliffe; Hari Shroff
Journal:  Nat Biotechnol       Date:  2013-10-13       Impact factor: 54.908

10.  A novel polymer of tubulin forms the conoid of Toxoplasma gondii.

Authors:  Ke Hu; David S Roos; John M Murray
Journal:  J Cell Biol       Date:  2002-03-18       Impact factor: 10.539

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  18 in total

1.  Dual-view photoacoustic microscopy for quantitative cell nuclear imaging.

Authors:  Terence T W Wong; Liren Zhu; Junhui Shi; Sung-Liang Chen; Lihong V Wang
Journal:  Opt Lett       Date:  2018-10-15       Impact factor: 3.776

2.  Adaptive optics improves multiphoton super-resolution imaging.

Authors:  Wei Zheng; Yicong Wu; Peter Winter; Robert Fischer; Damian Dalle Nogare; Amy Hong; Chad McCormick; Ryan Christensen; William P Dempsey; Don B Arnold; Joshua Zimmerberg; Ajay Chitnis; James Sellers; Clare Waterman; Hari Shroff
Journal:  Nat Methods       Date:  2017-06-19       Impact factor: 28.547

3.  Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope design.

Authors:  Talon Chandler; Shalin Mehta; Hari Shroff; Rudolf Oldenbourg; Patrick J La Rivière
Journal:  Opt Express       Date:  2017-12-11       Impact factor: 3.894

4.  Improved contrast in inverted selective plane illumination microscopy of thick tissues using confocal detection and structured illumination.

Authors:  Bihe Hu; Daniel Bolus; J Quincy Brown
Journal:  Biomed Opt Express       Date:  2017-11-13       Impact factor: 3.732

5.  Light-Sheet Microscopy in Neuroscience.

Authors:  Elizabeth M C Hillman; Venkatakaushik Voleti; Wenze Li; Hang Yu
Journal:  Annu Rev Neurosci       Date:  2019-07-08       Impact factor: 12.449

6.  Differential adhesion regulates neurite placement via a retrograde zippering mechanism.

Authors:  Titas Sengupta; Noelle L Koonce; Nabor Vázquez-Martínez; Mark W Moyle; Leighton H Duncan; Sarah E Emerson; Xiaofei Han; Lin Shao; Yicong Wu; Anthony Santella; Li Fan; Zhirong Bao; William A Mohler; Hari Shroff; Daniel A Colón-Ramos
Journal:  Elife       Date:  2021-11-16       Impact factor: 8.140

7.  Multiview confocal super-resolution microscopy.

Authors:  Yicong Wu; Xiaofei Han; Yijun Su; Melissa Glidewell; Jonathan S Daniels; Jiamin Liu; Titas Sengupta; Ivan Rey-Suarez; Robert Fischer; Akshay Patel; Christian Combs; Junhui Sun; Xufeng Wu; Ryan Christensen; Corey Smith; Lingyu Bao; Yilun Sun; Leighton H Duncan; Jiji Chen; Yves Pommier; Yun-Bo Shi; Elizabeth Murphy; Sougata Roy; Arpita Upadhyaya; Daniel Colón-Ramos; Patrick La Riviere; Hari Shroff
Journal:  Nature       Date:  2021-11-26       Impact factor: 69.504

Review 8.  Multiscale light-sheet for rapid imaging of cardiopulmonary system.

Authors:  Yichen Ding; Jianguo Ma; Adam D Langenbacher; Kyung In Baek; Juhyun Lee; Chih-Chiang Chang; Jeffrey J Hsu; Rajan P Kulkarni; John Belperio; Wei Shi; Sara Ranjbarvaziri; Reza Ardehali; Yin Tintut; Linda L Demer; Jau-Nian Chen; Peng Fei; René R Sevag Packard; Tzung K Hsiai
Journal:  JCI Insight       Date:  2018-08-23

9.  Rapid image deconvolution and multiview fusion for optical microscopy.

Authors:  Min Guo; Yue Li; Yijun Su; Talley Lambert; Damian Dalle Nogare; Mark W Moyle; Leighton H Duncan; Richard Ikegami; Anthony Santella; Ivan Rey-Suarez; Daniel Green; Anastasia Beiriger; Jiji Chen; Harshad Vishwasrao; Sundar Ganesan; Victoria Prince; Jennifer C Waters; Christina M Annunziata; Markus Hafner; William A Mohler; Ajay B Chitnis; Arpita Upadhyaya; Ted B Usdin; Zhirong Bao; Daniel Colón-Ramos; Patrick La Riviere; Huafeng Liu; Yicong Wu; Hari Shroff
Journal:  Nat Biotechnol       Date:  2020-06-29       Impact factor: 68.164

10.  Stability and function of a putative microtubule-organizing center in the human parasite Toxoplasma gondii.

Authors:  Jacqueline M Leung; Yudou He; Fangliang Zhang; Yu-Chen Hwang; Eiji Nagayasu; Jun Liu; John M Murray; Ke Hu
Journal:  Mol Biol Cell       Date:  2017-03-22       Impact factor: 4.138

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