Literature DB >> 24108093

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Yicong Wu1, Peter Wawrzusin, Justin Senseney, Robert S Fischer, Ryan Christensen, Anthony Santella, Andrew G York, Peter W Winter, Clare M Waterman, Zhirong Bao, Daniel A Colón-Ramos, Matthew McAuliffe, Hari Shroff.   

Abstract

Optimal four-dimensional imaging requires high spatial resolution in all dimensions, high speed and minimal photobleaching and damage. We developed a dual-view, plane illumination microscope with improved spatiotemporal resolution by switching illumination and detection between two perpendicular objectives in an alternating duty cycle. Computationally fusing the resulting volumetric views provides an isotropic resolution of 330 nm. As the sample is stationary and only two views are required, we achieve an imaging speed of 200 images/s (i.e., 0.5 s for a 50-plane volume). Unlike spinning-disk confocal or Bessel beam methods, which illuminate the sample outside the focal plane, we maintain high spatiotemporal resolution over hundreds of volumes with negligible photobleaching. To illustrate the ability of our method to study biological systems that require high-speed volumetric visualization and/or low photobleaching, we describe microtubule tracking in live cells, nuclear imaging over 14 h during nematode embryogenesis and imaging of neural wiring during Caenorhabditis elegans brain development over 5 h.

Entities:  

Mesh:

Year:  2013        PMID: 24108093      PMCID: PMC4105320          DOI: 10.1038/nbt.2713

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  42 in total

1.  Survey: interpolation methods in medical image processing.

Authors:  T M Lehmann; C Gönner; K Spitzer
Journal:  IEEE Trans Med Imaging       Date:  1999-11       Impact factor: 10.048

2.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

3.  Thin laser light sheet microscope for microbial oceanography.

Authors:  Eran Fuchs; Jules Jaffe; Richard Long; Farooq Azam
Journal:  Opt Express       Date:  2002-01-28       Impact factor: 3.894

Review 4.  Selective plane illumination microscopy techniques in developmental biology.

Authors:  Jan Huisken; Didier Y R Stainier
Journal:  Development       Date:  2009-06       Impact factor: 6.868

5.  Deep and fast live imaging with two-photon scanned light-sheet microscopy.

Authors:  Thai V Truong; Willy Supatto; David S Koos; John M Choi; Scott E Fraser
Journal:  Nat Methods       Date:  2011-07-17       Impact factor: 28.547

6.  The embryonic cell lineage of the nematode Caenorhabditis elegans.

Authors:  J E Sulston; E Schierenberg; J G White; J N Thomson
Journal:  Dev Biol       Date:  1983-11       Impact factor: 3.582

7.  Heparan sulfate proteoglycan-dependent induction of axon branching and axon misrouting by the Kallmann syndrome gene kal-1.

Authors:  Hannes E Bülow; Katherine L Berry; Liat H Topper; Elior Peles; Oliver Hobert
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

8.  Glia promote local synaptogenesis through UNC-6 (netrin) signaling in C. elegans.

Authors:  Daniel A Colón-Ramos; Milica A Margeta; Kang Shen
Journal:  Science       Date:  2007-10-05       Impact factor: 47.728

9.  DEX-1 and DYF-7 establish sensory dendrite length by anchoring dendritic tips during cell migration.

Authors:  Maxwell G Heiman; Shai Shaham
Journal:  Cell       Date:  2009-04-02       Impact factor: 41.582

10.  Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy.

Authors:  Andrew G York; Sapun H Parekh; Damian Dalle Nogare; Robert S Fischer; Kelsey Temprine; Marina Mione; Ajay B Chitnis; Christian A Combs; Hari Shroff
Journal:  Nat Methods       Date:  2012-05-13       Impact factor: 28.547

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  117 in total

1.  Efficient processing and analysis of large-scale light-sheet microscopy data.

Authors:  Fernando Amat; Burkhard Höckendorf; Yinan Wan; William C Lemon; Katie McDole; Philipp J Keller
Journal:  Nat Protoc       Date:  2015-10-01       Impact factor: 13.491

2.  Whole-animal functional and developmental imaging with isotropic spatial resolution.

Authors:  Raghav K Chhetri; Fernando Amat; Yinan Wan; Burkhard Höckendorf; William C Lemon; Philipp J Keller
Journal:  Nat Methods       Date:  2015-10-26       Impact factor: 28.547

3.  Imaging fluorescence (cross-) correlation spectroscopy in live cells and organisms.

Authors:  Jan W Krieger; Anand P Singh; Nirmalya Bag; Christoph S Garbe; Timothy E Saunders; Jörg Langowski; Thorsten Wohland
Journal:  Nat Protoc       Date:  2015-11-05       Impact factor: 13.491

4.  Compact plane illumination plugin device to enable light sheet fluorescence imaging of multi-cellular organisms on an inverted wide-field microscope.

Authors:  Zeyi Guan; Juhyun Lee; Hao Jiang; Siyan Dong; Nelson Jen; Tzung Hsiai; Chih-Ming Ho; Peng Fei
Journal:  Biomed Opt Express       Date:  2015-12-21       Impact factor: 3.732

5.  Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution.

Authors:  Leighton H Duncan; Mark W Moyle; Lin Shao; Titas Sengupta; Richard Ikegami; Abhishek Kumar; Min Guo; Ryan Christensen; Anthony Santella; Zhirong Bao; Hari Shroff; William Mohler; Daniel A Colón-Ramos
Journal:  J Vis Exp       Date:  2019-06-06       Impact factor: 1.355

6.  Two views on light sheets.

Authors:  Carl G Ebeling; Erik M Jorgensen
Journal:  Nat Biotechnol       Date:  2013-11       Impact factor: 54.908

Review 7.  Combinatorial decoding of the invariant C. elegans embryonic lineage in space and time.

Authors:  Amanda L Zacharias; John Isaac Murray
Journal:  Genesis       Date:  2016-03-19       Impact factor: 2.487

Review 8.  Advanced microscopy to elucidate cardiovascular injury and regeneration: 4D light-sheet imaging.

Authors:  Kyung In Baek; Yichen Ding; Chih-Chiang Chang; Megan Chang; René R Sevag Packard; Jeffrey J Hsu; Peng Fei; Tzung K Hsiai
Journal:  Prog Biophys Mol Biol       Date:  2018-05-09       Impact factor: 3.667

Review 9.  Faster fluorescence microscopy: advances in high speed biological imaging.

Authors:  Peter W Winter; Hari Shroff
Journal:  Curr Opin Chem Biol       Date:  2014-05-09       Impact factor: 8.822

10.  Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths.

Authors:  Maria Ingaramo; Andrew G York; Eelco Hoogendoorn; Marten Postma; Hari Shroff; George H Patterson
Journal:  Chemphyschem       Date:  2014-01-16       Impact factor: 3.102

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