Literature DB >> 24436314

Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths.

Maria Ingaramo1, Andrew G York, Eelco Hoogendoorn, Marten Postma, Hari Shroff, George H Patterson.   

Abstract

We use Richardson-Lucy (RL) deconvolution to combine multiple images of a simulated object into a single image in the context of modern fluorescence microscopy techniques. RL deconvolution can merge images with very different point-spread functions, such as in multiview light-sheet microscopes,1, 2 while preserving the best resolution information present in each image. We show that RL deconvolution is also easily applied to merge high-resolution, high-noise images with low-resolution, low-noise images, relevant when complementing conventional microscopy with localization microscopy. We also use RL deconvolution to merge images produced by different simulated illumination patterns, relevant to structured illumination microscopy (SIM)3, 4 and image scanning microscopy (ISM). The quality of our ISM reconstructions is at least as good as reconstructions using standard inversion algorithms for ISM data, but our method follows a simpler recipe that requires no mathematical insight. Finally, we apply RL deconvolution to merge a series of ten images with varying signal and resolution levels. This combination is relevant to gated stimulated-emission depletion (STED) microscopy, and shows that merges of high-quality images are possible even in cases for which a non-iterative inversion algorithm is unknown.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Richardson-Lucy; Toeplitz matrix; deconvolution; fluorescence microscopy; superresolution

Mesh:

Year:  2014        PMID: 24436314      PMCID: PMC3986040          DOI: 10.1002/cphc.201300831

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  11 in total

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4.  Imaging intracellular fluorescent proteins at nanometer resolution.

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6.  Wave optics theory and 3-D deconvolution for the light field microscope.

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7.  Multi-view image fusion improves resolution in three-dimensional microscopy.

Authors:  Jim Swoger; Peter Verveer; Klaus Greger; Jan Huisken; Ernst H K Stelzer
Journal:  Opt Express       Date:  2007-06-25       Impact factor: 3.894

8.  Sharper low-power STED nanoscopy by time gating.

Authors:  Giuseppe Vicidomini; Gael Moneron; Kyu Y Han; Volker Westphal; Haisen Ta; Matthias Reuss; Johann Engelhardt; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2011-06-05       Impact factor: 28.547

9.  Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Authors:  Yicong Wu; Peter Wawrzusin; Justin Senseney; Robert S Fischer; Ryan Christensen; Anthony Santella; Andrew G York; Peter W Winter; Clare M Waterman; Zhirong Bao; Daniel A Colón-Ramos; Matthew McAuliffe; Hari Shroff
Journal:  Nat Biotechnol       Date:  2013-10-13       Impact factor: 54.908

10.  Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy.

Authors:  Andrew G York; Sapun H Parekh; Damian Dalle Nogare; Robert S Fischer; Kelsey Temprine; Marina Mione; Ajay B Chitnis; Christian A Combs; Hari Shroff
Journal:  Nat Methods       Date:  2012-05-13       Impact factor: 28.547

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  15 in total

1.  Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy.

Authors:  Yicong Wu; Panagiotis Chandris; Peter W Winter; Edward Y Kim; Valentin Jaumouillé; Abhishek Kumar; Min Guo; Jacqueline M Leung; Corey Smith; Ivan Rey-Suarez; Huafeng Liu; Clare M Waterman; Kumaran S Ramamurthi; Patrick J La Riviere; Hari Shroff
Journal:  Optica       Date:  2016-08-11       Impact factor: 11.104

2.  Two-photon instant structured illumination microscopy improves the depth penetration of super-resolution imaging in thick scattering samples.

Authors:  Peter W Winter; Andrew G York; Damian Dalle Nogare; Maria Ingaramo; Ryan Christensen; Ajay Chitnis; George H Patterson; Hari Shroff
Journal:  Optica       Date:  2014-09-20       Impact factor: 11.104

3.  Virtual k-Space Modulation Optical Microscopy.

Authors:  Cuifang Kuang; Ye Ma; Renjie Zhou; Guoan Zheng; Yue Fang; Yingke Xu; Xu Liu; Peter T C So
Journal:  Phys Rev Lett       Date:  2016-07-06       Impact factor: 9.161

4.  Microglia control glutamatergic synapses in the adult mouse hippocampus.

Authors:  Bernadette Basilico; Laura Ferrucci; Patrizia Ratano; Maria T Golia; Alfonso Grimaldi; Maria Rosito; Valentina Ferretti; Ingrid Reverte; Caterina Sanchini; Maria C Marrone; Maria Giubettini; Valeria De Turris; Debora Salerno; Stefano Garofalo; Marie-Kim St-Pierre; Micael Carrier; Massimiliano Renzi; Francesca Pagani; Brijesh Modi; Marcello Raspa; Ferdinando Scavizzi; Cornelius T Gross; Silvia Marinelli; Marie-Ève Tremblay; Daniele Caprioli; Laura Maggi; Cristina Limatola; Silvia Di Angelantonio; Davide Ragozzino
Journal:  Glia       Date:  2021-10-18       Impact factor: 8.073

5.  Rapid image deconvolution and multiview fusion for optical microscopy.

Authors:  Min Guo; Yue Li; Yijun Su; Talley Lambert; Damian Dalle Nogare; Mark W Moyle; Leighton H Duncan; Richard Ikegami; Anthony Santella; Ivan Rey-Suarez; Daniel Green; Anastasia Beiriger; Jiji Chen; Harshad Vishwasrao; Sundar Ganesan; Victoria Prince; Jennifer C Waters; Christina M Annunziata; Markus Hafner; William A Mohler; Ajay B Chitnis; Arpita Upadhyaya; Ted B Usdin; Zhirong Bao; Daniel Colón-Ramos; Patrick La Riviere; Huafeng Liu; Yicong Wu; Hari Shroff
Journal:  Nat Biotechnol       Date:  2020-06-29       Impact factor: 68.164

6.  Upgrade of a Scanning Confocal Microscope to a Single-Beam Path STED Microscope.

Authors:  André Klauss; Marcelle König; Carsten Hille
Journal:  PLoS One       Date:  2015-06-19       Impact factor: 3.240

7.  Sparse deconvolution of high-density super-resolution images.

Authors:  Siewert Hugelier; Johan J de Rooi; Romain Bernex; Sam Duwé; Olivier Devos; Michel Sliwa; Peter Dedecker; Paul H C Eilers; Cyril Ruckebusch
Journal:  Sci Rep       Date:  2016-02-25       Impact factor: 4.379

8.  Optimal 2D-SIM reconstruction by two filtering steps with Richardson-Lucy deconvolution.

Authors:  Victor Perez; Bo-Jui Chang; Ernst Hans Karl Stelzer
Journal:  Sci Rep       Date:  2016-11-16       Impact factor: 4.379

9.  Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.

Authors:  Carsten Wolff; Jean-Yves Tinevez; Tobias Pietzsch; Evangelia Stamataki; Benjamin Harich; Léo Guignard; Stephan Preibisch; Spencer Shorte; Philipp J Keller; Pavel Tomancak; Anastasios Pavlopoulos
Journal:  Elife       Date:  2018-03-29       Impact factor: 8.140

10.  Two-photon-like microscopy with orders-of-magnitude lower illumination intensity via two-step fluorescence.

Authors:  Maria Ingaramo; Andrew G York; Eric J Andrade; Kristin Rainey; George H Patterson
Journal:  Nat Commun       Date:  2015-09-03       Impact factor: 14.919

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