Literature DB >> 31283896

Light-Sheet Microscopy in Neuroscience.

Elizabeth M C Hillman1, Venkatakaushik Voleti1, Wenze Li1, Hang Yu1.   

Abstract

Light-sheet microscopy is an imaging approach that offers unique advantages for a diverse range of neuroscience applications. Unlike point-scanning techniques such as confocal and two-photon microscopy, light-sheet microscopes illuminate an entire plane of tissue, while imaging this plane onto a camera. Although early implementations of light sheet were optimized for longitudinal imaging of embryonic development in small specimens, emerging implementations are capable of capturing light-sheet images in freely moving, unconstrained specimens and even the intact in vivo mammalian brain. Meanwhile, the unique photobleaching and signal-to-noise benefits afforded by light-sheet microscopy's parallelized detection deliver the ability to perform volumetric imaging at much higher speeds than can be achieved using point scanning. This review describes the basic principles and evolution of light-sheet microscopy, followed by perspectives on emerging applications and opportunities for both imaging large, cleared, and expanded neural tissues and high-speed, functional imaging in vivo.

Entities:  

Keywords:  GCaMP; functional imaging; light sheet; microscopy; tissue clearing

Year:  2019        PMID: 31283896      PMCID: PMC6800245          DOI: 10.1146/annurev-neuro-070918-050357

Source DB:  PubMed          Journal:  Annu Rev Neurosci        ISSN: 0147-006X            Impact factor:   12.449


  81 in total

1.  High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision.

Authors:  Benjamin F Grewe; Dominik Langer; Hansjörg Kasper; Björn M Kampa; Fritjof Helmchen
Journal:  Nat Methods       Date:  2010-04-18       Impact factor: 28.547

Review 2.  Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy.

Authors:  Philipp J Keller; Misha B Ahrens
Journal:  Neuron       Date:  2015-02-04       Impact factor: 17.173

3.  RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.

Authors:  Kok Hao Chen; Alistair N Boettiger; Jeffrey R Moffitt; Siyuan Wang; Xiaowei Zhuang
Journal:  Science       Date:  2015-04-09       Impact factor: 47.728

4.  Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination.

Authors:  Thomas A Planchon; Liang Gao; Daniel E Milkie; Michael W Davidson; James A Galbraith; Catherine G Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2011-03-04       Impact factor: 28.547

5.  Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.

Authors:  Ruixuan Gao; Shoh M Asano; Srigokul Upadhyayula; Igor Pisarev; Daniel E Milkie; Tsung-Li Liu; Ved Singh; Austin Graves; Grace H Huynh; Yongxin Zhao; John Bogovic; Jennifer Colonell; Carolyn M Ott; Christopher Zugates; Susan Tappan; Alfredo Rodriguez; Kishore R Mosaliganti; Shu-Hsien Sheu; H Amalia Pasolli; Song Pang; C Shan Xu; Sean G Megason; Harald Hess; Jennifer Lippincott-Schwartz; Adam Hantman; Gerald M Rubin; Tom Kirchhausen; Stephan Saalfeld; Yoshinori Aso; Edward S Boyden; Eric Betzig
Journal:  Science       Date:  2019-01-18       Impact factor: 47.728

6.  SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function.

Authors:  Raju Tomer; Matthew Lovett-Barron; Isaac Kauvar; Aaron Andalman; Vanessa M Burns; Sethuraman Sankaran; Logan Grosenick; Michael Broxton; Samuel Yang; Karl Deisseroth
Journal:  Cell       Date:  2015-12-17       Impact factor: 41.582

7.  Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy.

Authors:  Kevin M Dean; Philippe Roudot; Erik S Welf; Gaudenz Danuser; Reto Fiolka
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

8.  Light sheet theta microscopy for rapid high-resolution imaging of large biological samples.

Authors:  Bianca Migliori; Malika S Datta; Christophe Dupre; Mehmet C Apak; Shoh Asano; Ruixuan Gao; Edward S Boyden; Ola Hermanson; Rafael Yuste; Raju Tomer
Journal:  BMC Biol       Date:  2018-05-29       Impact factor: 7.431

9.  Characterization of Proprioceptive System Dynamics in Behaving Drosophila Larvae Using High-Speed Volumetric Microscopy.

Authors:  Rebecca D Vaadia; Wenze Li; Venkatakaushik Voleti; Aditi Singhania; Elizabeth M C Hillman; Wesley B Grueber
Journal:  Curr Biol       Date:  2019-03-07       Impact factor: 10.834

10.  Two-photon imaging with diffractive optical elements.

Authors:  Brendon O Watson; Volodymyr Nikolenko; Rafael Yuste
Journal:  Front Neural Circuits       Date:  2009-07-06       Impact factor: 3.492

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  32 in total

Review 1.  Advanced imaging and labelling methods to decipher brain cell organization and function.

Authors:  Daniel Choquet; Matthieu Sainlos; Jean-Baptiste Sibarita
Journal:  Nat Rev Neurosci       Date:  2021-03-12       Impact factor: 34.870

Review 2.  Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity-at Depth and in Real Time.

Authors:  Laurent C Moreaux; Dimitri Yatsenko; Wesley D Sacher; Jaebin Choi; Changhyuk Lee; Nicole J Kubat; R James Cotton; Edward S Boyden; Michael Z Lin; Lin Tian; Andreas S Tolias; Joyce K S Poon; Kenneth L Shepard; Michael L Roukes
Journal:  Neuron       Date:  2020-10-14       Impact factor: 17.173

3.  In vivo NIR-II structured-illumination light-sheet microscopy.

Authors:  Feifei Wang; Zhuoran Ma; Yeteng Zhong; Felix Salazar; Chun Xu; Fuqiang Ren; Liangqiong Qu; Anna M Wu; Hongjie Dai
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

4.  Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy.

Authors:  Chen Li; Adele Moatti; Xuying Zhang; H Troy Ghashghaei; Alon Greenabum
Journal:  Biomed Opt Express       Date:  2021-07-22       Impact factor: 3.732

5.  Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning.

Authors:  Chen Li; Mani Ratnam Rai; H Troy Ghashghaei; Alon Greenbaum
Journal:  Biomed Opt Express       Date:  2022-01-21       Impact factor: 3.732

Review 6.  Pushing the frontiers: tools for monitoring neurotransmitters and neuromodulators.

Authors:  Zhaofa Wu; Dayu Lin; Yulong Li
Journal:  Nat Rev Neurosci       Date:  2022-03-31       Impact factor: 34.870

7.  CompassLSM: axially swept light-sheet microscopy made simple.

Authors:  Yehe Liu; Andrew M Rollins; Michael W Jenkins
Journal:  Biomed Opt Express       Date:  2021-09-27       Impact factor: 3.732

8.  Cryogenic contrast-enhanced microCT enables nondestructive 3D quantitative histopathology of soft biological tissues.

Authors:  Arne Maes; Camille Pestiaux; Alice Marino; Tim Balcaen; Lisa Leyssens; Sarah Vangrunderbeeck; Grzegorz Pyka; Wim M De Borggraeve; Luc Bertrand; Christophe Beauloye; Sandrine Horman; Martine Wevers; Greet Kerckhofs
Journal:  Nat Commun       Date:  2022-10-20       Impact factor: 17.694

9.  Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain.

Authors:  David M Young; Siavash Fazel Darbandi; Grace Schwartz; Zachary Bonzell; Deniz Yuruk; Mai Nojima; Laurent C Gole; John Lr Rubenstein; Weimiao Yu; Stephan J Sanders
Journal:  Elife       Date:  2021-02-11       Impact factor: 8.140

Review 10.  From whole organism to ultrastructure: progress in axonal imaging for decoding circuit development.

Authors:  Cory J Weaver; Fabienne E Poulain
Journal:  Development       Date:  2021-07-30       Impact factor: 6.862

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