Literature DB >> 25825747

Structural basis for the geometry-driven localization of a small protein.

Richard L Gill1, Jean-Philippe Castaing2, Jen Hsin3, Irene S Tan4, Xingsheng Wang1, Kerwyn Casey Huang5, Fang Tian6, Kumaran S Ramamurthi7.   

Abstract

In bacteria, certain shape-sensing proteins localize to differently curved membranes. During sporulation in Bacillus subtilis, the only convex (positively curved) surface in the cell is the forespore, an approximately spherical internal organelle. Previously, we demonstrated that SpoVM localizes to the forespore by preferentially adsorbing onto slightly convex membranes. Here, we used NMR and molecular dynamics simulations of SpoVM and a localization mutant (SpoVM(P9A)) to reveal that SpoVM's atypical amphipathic α-helix inserts deeply into the membrane and interacts extensively with acyl chains to sense packing differences in differently curved membranes. Based on binding to spherical supported lipid bilayers and Monte Carlo simulations, we hypothesize that SpoVM's membrane insertion, along with potential cooperative interactions with other SpoVM molecules in the lipid bilayer, drives its preferential localization onto slightly convex membranes. Such a mechanism, which is distinct from that used by high curvature-sensing proteins, may be widely conserved for the localization of proteins onto the surface of cellular organelles.

Entities:  

Keywords:  ArfGAP1; DivIVA; SpoIVA; curvature sensing; lipid packing

Mesh:

Substances:

Year:  2015        PMID: 25825747      PMCID: PMC4403194          DOI: 10.1073/pnas.1423868112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  54 in total

1.  BAR domains as sensors of membrane curvature: the amphiphysin BAR structure.

Authors:  Brian J Peter; Helen M Kent; Ian G Mills; Yvonne Vallis; P Jonathan G Butler; Philip R Evans; Harvey T McMahon
Journal:  Science       Date:  2003-11-26       Impact factor: 47.728

2.  Evidence that subcellular localization of a bacterial membrane protein is achieved by diffusion and capture.

Authors:  David Z Rudner; Qi Pan; Richard M Losick
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

3.  Snorkeling of lysine side chains in transmembrane helices: how easy can it get?

Authors:  Erik Strandberg; J Antoinette Killian
Journal:  FEBS Lett       Date:  2003-06-05       Impact factor: 4.124

4.  Characterization of spoIVA, a sporulation gene involved in coat morphogenesis in Bacillus subtilis.

Authors:  S Roels; A Driks; R Losick
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

5.  The structure of melittin. II. Interpretation of the structure.

Authors:  T C Terwilliger; D Eisenberg
Journal:  J Biol Chem       Date:  1982-06-10       Impact factor: 5.157

6.  Contribution of proline-14 to the structure and actions of melittin.

Authors:  C E Dempsey; R Bazzo; T S Harvey; I Syperek; G Boheim; I D Campbell
Journal:  FEBS Lett       Date:  1991-04-09       Impact factor: 4.124

7.  Physical properties of single phospholipid bilayers adsorbed to micro glass beads. A new vesicular model system studied by 2H-nuclear magnetic resonance.

Authors:  T M Bayerl; M Bloom
Journal:  Biophys J       Date:  1990-08       Impact factor: 4.033

8.  An autoinhibitory conformation of the Bacillus subtilis spore coat protein SpoIVA prevents its premature ATP-independent aggregation.

Authors:  Jean-Philippe Castaing; Scarlett Lee; Vivek Anantharaman; Geoffrey E Ravilious; L Aravind; Kumaran S Ramamurthi
Journal:  FEMS Microbiol Lett       Date:  2014-05-20       Impact factor: 2.742

9.  Lipid packing sensed by ArfGAP1 couples COPI coat disassembly to membrane bilayer curvature.

Authors:  Joëlle Bigay; Pierre Gounon; Sylviane Robineau; Bruno Antonny
Journal:  Nature       Date:  2003-12-04       Impact factor: 49.962

10.  Construction of a cloning site near one end of Tn917 into which foreign DNA may be inserted without affecting transposition in Bacillus subtilis or expression of the transposon-borne erm gene.

Authors:  P Youngman; J B Perkins; R Losick
Journal:  Plasmid       Date:  1984-07       Impact factor: 3.466

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  33 in total

Review 1.  Cell Death Pathway That Monitors Spore Morphogenesis.

Authors:  Amanda R Decker; Kumaran S Ramamurthi
Journal:  Trends Microbiol       Date:  2017-04-10       Impact factor: 17.079

Review 2.  The Unsolved Problem of How Cells Sense Micron-Scale Curvature.

Authors:  Kevin S Cannon; Benjamin L Woods; Amy S Gladfelter
Journal:  Trends Biochem Sci       Date:  2017-10-28       Impact factor: 13.807

3.  Formation and Properties of a Self-Assembled Nanoparticle-Supported Lipid Bilayer Probed through Molecular Dynamics Simulations.

Authors:  Haoyuan Jing; Yanbin Wang; Parth Rakesh Desai; Kumaran S Ramamurthi; Siddhartha Das
Journal:  Langmuir       Date:  2020-05-12       Impact factor: 3.882

4.  Spherical nanoparticle supported lipid bilayers for the structural study of membrane geometry-sensitive molecules.

Authors:  Riqiang Fu; Richard L Gill; Edward Y Kim; Nicole E Briley; Erin R Tyndall; Jie Xu; Conggang Li; Kumaran S Ramamurthi; John M Flanagan; Fang Tian
Journal:  J Am Chem Soc       Date:  2015-10-28       Impact factor: 15.419

5.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

6.  Mechanism and Determinants of Amphipathic Helix-Containing Protein Targeting to Lipid Droplets.

Authors:  Coline Prévost; Morris E Sharp; Nora Kory; Qingqing Lin; Gregory A Voth; Robert V Farese; Tobias C Walther
Journal:  Dev Cell       Date:  2018-01-08       Impact factor: 12.270

7.  Autoregulation of SafA Assembly through Recruitment of a Protein Cross-Linking Enzyme.

Authors:  Catarina G Fernandes; Charles P Moran; Adriano O Henriques
Journal:  J Bacteriol       Date:  2018-06-25       Impact factor: 3.490

8.  A 2-dimensional ratchet model describes assembly initiation of a specialized bacterial cell surface.

Authors:  Emily A Peluso; Taylor B Updegrove; Jiji Chen; Hari Shroff; Kumaran S Ramamurthi
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-09       Impact factor: 11.205

9.  A Quality-Control Mechanism Removes Unfit Cells from a Population of Sporulating Bacteria.

Authors:  Irene S Tan; Cordelia A Weiss; David L Popham; Kumaran S Ramamurthi
Journal:  Dev Cell       Date:  2015-09-17       Impact factor: 12.270

Review 10.  Membrane remodeling and mechanics: Experiments and simulations of α-Synuclein.

Authors:  Ana West; Benjamin E Brummel; Anthony R Braun; Elizabeth Rhoades; Jonathan N Sachs
Journal:  Biochim Biophys Acta       Date:  2016-03-10
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