Literature DB >> 22047760

Microscopy in 3D: a biologist's toolbox.

Robert S Fischer1, Yicong Wu, Pakorn Kanchanawong, Hari Shroff, Clare M Waterman.   

Abstract

The power of fluorescence microscopy to study cellular structures and macromolecular complexes spans a wide range of size scales, from studies of cell behavior and function in physiological 3D environments to understanding the molecular architecture of organelles. At each length scale, the challenge in 3D imaging is to extract the most spatial and temporal resolution possible while limiting photodamage/bleaching to living cells. Several advances in 3D fluorescence microscopy now offer higher resolution, improved speed, and reduced photobleaching relative to traditional point-scanning microscopy methods. We discuss a few specific microscopy modalities that we believe will be particularly advantageous in imaging cells and subcellular structures in physiologically relevant 3D environments. Published by Elsevier Ltd.

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Mesh:

Year:  2011        PMID: 22047760      PMCID: PMC3478882          DOI: 10.1016/j.tcb.2011.09.008

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  77 in total

1.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

Review 2.  Deep tissue two-photon microscopy.

Authors:  Fritjof Helmchen; Winfried Denk
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

Review 3.  Selective plane illumination microscopy techniques in developmental biology.

Authors:  Jan Huisken; Didier Y R Stainier
Journal:  Development       Date:  2009-06       Impact factor: 6.868

4.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

5.  Quantitative determination of the reduction of phototoxicity and photobleaching by controlled light exposure microscopy.

Authors:  R A Hoebe; H T M Van der Voort; J Stap; C J F Van Noorden; E M M Manders
Journal:  J Microsc       Date:  2008-07       Impact factor: 1.758

6.  STED nanoscopy of actin dynamics in synapses deep inside living brain slices.

Authors:  Nicolai T Urban; Katrin I Willig; Stefan W Hell; U Valentin Nägerl
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

7.  Localizing and tracking single nanoscale emitters in three dimensions with high spatiotemporal resolution using a double-helix point spread function.

Authors:  Michael A Thompson; Matthew D Lew; Majid Badieirostami; W E Moerner
Journal:  Nano Lett       Date:  2010-01       Impact factor: 11.189

8.  Visualizing stromal cell dynamics in different tumor microenvironments by spinning disk confocal microscopy.

Authors:  Mikala Egeblad; Andrew J Ewald; Hanne A Askautrud; Morgan L Truitt; Bryan E Welm; Emma Bainbridge; George Peeters; Matthew F Krummel; Zena Werb
Journal:  Dis Model Mech       Date:  2008-09-18       Impact factor: 5.758

9.  Coupling between clathrin-dependent endocytic budding and F-BAR-dependent tubulation in a cell-free system.

Authors:  Min Wu; Bo Huang; Morven Graham; Andrea Raimondi; John E Heuser; Xiaowei Zhuang; Pietro De Camilli
Journal:  Nat Cell Biol       Date:  2010-08-22       Impact factor: 28.824

10.  Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Anthony Santella; Khaled Khairy; Zhirong Bao; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Nat Methods       Date:  2010-07-04       Impact factor: 28.547

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  48 in total

1.  Fluorescence micro-optical sectioning tomography using acousto-optical deflector-based confocal scheme.

Authors:  Xiaoli Qi; Tao Yang; Longhui Li; Jiancun Wang; Shaoqun Zeng; Xiaohua Lv
Journal:  Neurophotonics       Date:  2015-10-15       Impact factor: 3.593

Review 2.  Taking a deep look: modern microscopy technologies to optimize the design and functionality of biocompatible scaffolds for tissue engineering in regenerative medicine.

Authors:  M Vielreicher; S Schürmann; R Detsch; M A Schmidt; A Buttgereit; A Boccaccini; O Friedrich
Journal:  J R Soc Interface       Date:  2013-07-17       Impact factor: 4.118

Review 3.  Toward single cell traction microscopy within 3D collagen matrices.

Authors:  Matthew S Hall; Rong Long; Xinzeng Feng; Yuling Huang; Chung-Yuen Hui; Mingming Wu
Journal:  Exp Cell Res       Date:  2013-06-25       Impact factor: 3.905

4.  Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM).

Authors:  Abhishek Kumar; Ryan Christensen; Min Guo; Panos Chandris; William Duncan; Yicong Wu; Anthony Santella; Mark Moyle; Peter W Winter; Daniel Colón-Ramos; Zhirong Bao; Hari Shroff
Journal:  Biol Bull       Date:  2016-08       Impact factor: 1.818

Review 5.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

Review 6.  Building quantitative, three-dimensional atlases of gene expression and morphology at cellular resolution.

Authors:  David W Knowles; Mark D Biggin
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2013-02-04       Impact factor: 5.814

Review 7.  Faster fluorescence microscopy: advances in high speed biological imaging.

Authors:  Peter W Winter; Hari Shroff
Journal:  Curr Opin Chem Biol       Date:  2014-05-09       Impact factor: 8.822

8.  Two-photon instant structured illumination microscopy improves the depth penetration of super-resolution imaging in thick scattering samples.

Authors:  Peter W Winter; Andrew G York; Damian Dalle Nogare; Maria Ingaramo; Ryan Christensen; Ajay Chitnis; George H Patterson; Hari Shroff
Journal:  Optica       Date:  2014-09-20       Impact factor: 11.104

9.  Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry.

Authors:  Peter Nemes; Stanislav S Rubakhin; Jordan T Aerts; Jonathan V Sweedler
Journal:  Nat Protoc       Date:  2013-03-28       Impact factor: 13.491

10.  Photoreceptor-derived activin promotes dendritic termination and restricts the receptive fields of first-order interneurons in Drosophila.

Authors:  Chun-Yuan Ting; Philip G McQueen; Nishith Pandya; Tzu-Yang Lin; Meiluen Yang; O Venkateswara Reddy; Michael B O'Connor; Matthew McAuliffe; Chi-Hon Lee
Journal:  Neuron       Date:  2014-01-23       Impact factor: 17.173

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