Literature DB >> 27721014

Genetically encoding new bioreactivity.

Lei Wang1.   

Abstract

The genetic code can be expanded to include unnatural amino acids (Uaas) by engineering orthogonal components involved in protein translation. To be compatible with live cells, side chains of Uaas have been limited to either chemically inert or bio-orthogonal (i.e., nonreactive toward biomolecules) functionalities. To introduce bioreactivity into live systems, the genetic code has recently been engineered to encode a new class of Uaas, the bioreactive Uaas. These Uaas, after being incorporated into proteins, specifically react with target natural amino acid residues via proximity-enabled bioreactivity, enabling the selective formation of new covalent linkages within and between proteins both in vitro and in live systems. The new covalent bonding ability has been harnessed within proteins to enhance photostability, increase thermostability, staple proteins recombinantly, and build optical nano-switches, and between proteins to pinpoint ligand-receptor interaction, target native receptors irreversibly, and generate covalent macromolecular inhibitors. These diverse bioreactivities, inaccessible to natural proteins, thus open doors to novel protein engineering and provide new avenues for biological studies, biotherapeutics and synthetic biology.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Expansion of the genetic code; Protein crosslinking; Protein engineering; Protein interaction; Proximity enabled reactivity; Unnatural amino acid

Mesh:

Substances:

Year:  2016        PMID: 27721014      PMCID: PMC5382139          DOI: 10.1016/j.nbt.2016.10.003

Source DB:  PubMed          Journal:  N Biotechnol        ISSN: 1871-6784            Impact factor:   5.079


  74 in total

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Authors:  Martin Högbom; Malin Eklund; Per-Ake Nygren; Pär Nordlund
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Review 2.  DNA-templated organic synthesis: nature's strategy for controlling chemical reactivity applied to synthetic molecules.

Authors:  Xiaoyu Li; David R Liu
Journal:  Angew Chem Int Ed Engl       Date:  2004-09-20       Impact factor: 15.336

3.  New methods enabling efficient incorporation of unnatural amino acids in yeast.

Authors:  Qian Wang; Lei Wang
Journal:  J Am Chem Soc       Date:  2008-04-22       Impact factor: 15.419

4.  Phospha-Michael Addition as a New Click Reaction for Protein Functionalization.

Authors:  Yan-Jiun Lee; Yadagiri Kurra; Wenshe R Liu
Journal:  Chembiochem       Date:  2016-02-16       Impact factor: 3.164

Review 5.  Optical control of neuronal activity.

Authors:  Stephanie Szobota; Ehud Y Isacoff
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

6.  Structural basis for high-affinity HER2 receptor binding by an engineered protein.

Authors:  Charles Eigenbrot; Mark Ultsch; Anatoly Dubnovitsky; Lars Abrahmsén; Torleif Härd
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-09       Impact factor: 11.205

7.  Genetically encoding unnatural amino acids for cellular and neuronal studies.

Authors:  Wenyuan Wang; Jeffrey K Takimoto; Gordon V Louie; Thomas J Baiga; Joseph P Noel; Kuo-Fen Lee; Paul A Slesinger; Lei Wang
Journal:  Nat Neurosci       Date:  2007-07-01       Impact factor: 24.884

8.  Expanding the genetic code of an animal.

Authors:  Sebastian Greiss; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-08-22       Impact factor: 15.419

9.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

10.  Genetically encoding an electrophilic amino acid for protein stapling and covalent binding to native receptors.

Authors:  Xiao-Hua Chen; Zheng Xiang; Ying S Hu; Vanessa K Lacey; Hu Cang; Lei Wang
Journal:  ACS Chem Biol       Date:  2014-07-15       Impact factor: 5.100

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  25 in total

1.  Oxidation-induced generation of a mild electrophile for proximity-enhanced protein-protein crosslinking.

Authors:  X Shang; Y Chen; N Wang; W Niu; J Guo
Journal:  Chem Commun (Camb)       Date:  2018-04-19       Impact factor: 6.222

2.  From Fuzzy to Function: The New Frontier of Protein-Protein Interactions.

Authors:  Rachel Pricer; Jason E Gestwicki; Anna K Mapp
Journal:  Acc Chem Res       Date:  2017-03-21       Impact factor: 22.384

3.  Genetically Encoding Photocaged Quinone Methide to Multitarget Protein Residues Covalently in Vivo.

Authors:  Jun Liu; Shanshan Li; Nayyar A Aslam; Feng Zheng; Bing Yang; Rujin Cheng; Nanxi Wang; Sharon Rozovsky; Peng G Wang; Qian Wang; Lei Wang
Journal:  J Am Chem Soc       Date:  2019-06-04       Impact factor: 15.419

4.  Oxygen-dependent asparagine hydroxylation of the ubiquitin-associated (UBA) domain in Cezanne regulates ubiquitin binding.

Authors:  Julia Mader; Jessica Huber; Florian Bonn; Volker Dötsch; Vladimir V Rogov; Anja Bremm
Journal:  J Biol Chem       Date:  2020-01-14       Impact factor: 5.157

5.  Genetically Introducing Biochemically Reactive Amino Acids Dehydroalanine and Dehydrobutyrine in Proteins.

Authors:  Bing Yang; Nanxi Wang; Paul D Schnier; Feng Zheng; He Zhu; Nicholas F Polizzi; Avinash Ittuveetil; Varma Saikam; William F DeGrado; Qian Wang; Peng G Wang; Lei Wang
Journal:  J Am Chem Soc       Date:  2019-05-03       Impact factor: 15.419

6.  Facile synthesis of a novel genetically encodable fluorescent α-amino acid emitting greenish blue light.

Authors:  Aakash Gupta; Brian P Garreffi; Maolin Guo
Journal:  Chem Commun (Camb)       Date:  2020-09-18       Impact factor: 6.222

7.  Optimizing the Genetic Incorporation of Chemical Probes into GPCRs for Photo-crosslinking Mapping and Bioorthogonal Chemistry in Live Mammalian Cells.

Authors:  Robert Serfling; Lisa Seidel; Thore Böttke; Irene Coin
Journal:  J Vis Exp       Date:  2018-04-09       Impact factor: 1.355

8.  Addition of Isocyanide-Containing Amino Acids to the Genetic Code for Protein Labeling and Activation.

Authors:  Yuda Chen; Kuan-Lin Wu; Juan Tang; Axel Loredo; Jordan Clements; Jingqi Pei; Zane Peng; Ruchi Gupta; Xinlei Fang; Han Xiao
Journal:  ACS Chem Biol       Date:  2019-11-14       Impact factor: 5.100

9.  Proximity-enhanced SuFEx chemical cross-linker for specific and multitargeting cross-linking mass spectrometry.

Authors:  Bing Yang; Haifan Wu; Paul D Schnier; Yansheng Liu; Jun Liu; Nanxi Wang; William F DeGrado; Lei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-15       Impact factor: 11.205

10.  Genetically encoding photoswitchable click amino acids for general optical control of conformation and function of proteins.

Authors:  Christian Hoppmann; Lei Wang
Journal:  Methods Enzymol       Date:  2019-05-02       Impact factor: 1.600

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