Literature DB >> 28945413

From Fuzzy to Function: The New Frontier of Protein-Protein Interactions.

Rachel Pricer1,2, Jason E Gestwicki3, Anna K Mapp1,2,4.   

Abstract

Conformationally heterogenous or "fuzzy" proteins have often been described as lacking specificity in binding and in function. The activation domains, for example, of transcriptional activators were labeled as negative noodles, with little structure or specificity. However, emerging data illustrates that the opposite is true: conformational heterogeneity enables context-specific function to emerge in response to changing cellular conditions and, furthermore, allows a single structural motif to be used in multiple settings. A further benefit is that conformational heterogeneity can be harnessed for the discovery of allosteric drug-like modulators, targeting critical pathways in protein homeostasis and transcription.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28945413      PMCID: PMC5786153          DOI: 10.1021/acs.accounts.6b00565

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  32 in total

Review 1.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  High-throughput screen for Escherichia coli heat shock protein 70 (Hsp70/DnaK): ATPase assay in low volume by exploiting energy transfer.

Authors:  Yoshinari Miyata; Lyra Chang; Anthony Bainor; Thomas J McQuade; Christopher P Walczak; Yaru Zhang; Martha J Larsen; Paul Kirchhoff; Jason E Gestwicki
Journal:  J Biomol Screen       Date:  2010-10-06

Review 3.  Fine-tuning multiprotein complexes using small molecules.

Authors:  Andrea D Thompson; Amanda Dugan; Jason E Gestwicki; Anna K Mapp
Journal:  ACS Chem Biol       Date:  2012-07-23       Impact factor: 5.100

4.  Molecular chaperones DnaK and DnaJ share predicted binding sites on most proteins in the E. coli proteome.

Authors:  Sharan R Srinivasan; Anne T Gillies; Lyra Chang; Andrea D Thompson; Jason E Gestwicki
Journal:  Mol Biosyst       Date:  2012-06-25

5.  Allostery within a transcription coactivator is predominantly mediated through dissociation rate constants.

Authors:  Sarah L Shammas; Alexandra J Travis; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

Review 6.  Genetically encoding new bioreactivity.

Authors:  Lei Wang
Journal:  N Biotechnol       Date:  2016-10-06       Impact factor: 5.079

7.  Interaction of c-Myb with p300 is required for the induction of acute myeloid leukemia (AML) by human AML oncogenes.

Authors:  Diwakar R Pattabiraman; Crystal McGirr; Konstantin Shakhbazov; Valerie Barbier; Keerthana Krishnan; Pamela Mukhopadhyay; Paula Hawthorne; Ann Trezise; Jianmin Ding; Sean M Grimmond; Peter Papathanasiou; Warren S Alexander; Andrew C Perkins; Jean-Pierre Levesque; Ingrid G Winkler; Thomas J Gonda
Journal:  Blood       Date:  2014-03-04       Impact factor: 22.113

8.  Identification of small molecules that modify the protein folding activity of heat shock protein 70.

Authors:  Susanne Wisén; Jason E Gestwicki
Journal:  Anal Biochem       Date:  2007-12-14       Impact factor: 3.365

9.  Molecular events during translocation and proofreading extracted from 200 static structures of DNA polymerase.

Authors:  Zhong Ren
Journal:  Nucleic Acids Res       Date:  2016-06-20       Impact factor: 16.971

Review 10.  Direct and Propagated Effects of Small Molecules on Protein-Protein Interaction Networks.

Authors:  Laura C Cesa; Anna K Mapp; Jason E Gestwicki
Journal:  Front Bioeng Biotechnol       Date:  2015-08-24
View more
  15 in total

1.  Chemical Perturbation of Oncogenic Protein Folding: from the Prediction of Locally Unstable Structures to the Design of Disruptors of Hsp90-Client Interactions.

Authors:  Antonella Paladino; Mark R Woodford; Sarah J Backe; Rebecca A Sager; Priyanka Kancherla; Michael A Daneshvar; Victor Z Chen; Dimitra Bourboulia; Elham F Ahanin; Chrisostomos Prodromou; Greta Bergamaschi; Alessandro Strada; Marina Cretich; Alessandro Gori; Marina Veronesi; Tiziano Bandiera; Renzo Vanna; Gennady Bratslavsky; Stefano A Serapian; Mehdi Mollapour; Giorgio Colombo
Journal:  Chemistry       Date:  2020-07-08       Impact factor: 5.236

2.  Understanding p300-transcription factor interactions using sequence variation and hybridization.

Authors:  Fruzsina Hóbor; Zsófia Hegedüs; Amaurys Avila Ibarra; Vencel L Petrovicz; Gail J Bartlett; Richard B Sessions; Andrew J Wilson; Thomas A Edwards
Journal:  RSC Chem Biol       Date:  2022-04-11

Review 3.  Inhibitors of protein-protein interactions (PPIs): an analysis of scaffold choices and buried surface area.

Authors:  Xu Ran; Jason E Gestwicki
Journal:  Curr Opin Chem Biol       Date:  2018-06-13       Impact factor: 8.822

4.  DisProt: intrinsic protein disorder annotation in 2020.

Authors:  András Hatos; Borbála Hajdu-Soltész; Alexander M Monzon; Nicolas Palopoli; Lucía Álvarez; Burcu Aykac-Fas; Claudio Bassot; Guillermo I Benítez; Martina Bevilacqua; Anastasia Chasapi; Lucia Chemes; Norman E Davey; Radoslav Davidović; A Keith Dunker; Arne Elofsson; Julien Gobeill; Nicolás S González Foutel; Govindarajan Sudha; Mainak Guharoy; Tamas Horvath; Valentin Iglesias; Andrey V Kajava; Orsolya P Kovacs; John Lamb; Matteo Lambrughi; Tamas Lazar; Jeremy Y Leclercq; Emanuela Leonardi; Sandra Macedo-Ribeiro; Mauricio Macossay-Castillo; Emiliano Maiani; José A Manso; Cristina Marino-Buslje; Elizabeth Martínez-Pérez; Bálint Mészáros; Ivan Mičetić; Giovanni Minervini; Nikoletta Murvai; Marco Necci; Christos A Ouzounis; Mátyás Pajkos; Lisanna Paladin; Rita Pancsa; Elena Papaleo; Gustavo Parisi; Emilie Pasche; Pedro J Barbosa Pereira; Vasilis J Promponas; Jordi Pujols; Federica Quaglia; Patrick Ruch; Marco Salvatore; Eva Schad; Beata Szabo; Tamás Szaniszló; Stella Tamana; Agnes Tantos; Nevena Veljkovic; Salvador Ventura; Wim Vranken; Zsuzsanna Dosztányi; Peter Tompa; Silvio C E Tosatto; Damiano Piovesan
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

Review 5.  THE IMS PARADOX: A PERSPECTIVE ON STRUCTURAL ION MOBILITY-MASS SPECTROMETRY.

Authors:  Jacob W McCabe; Michael J Hebert; Mehdi Shirzadeh; Christopher S Mallis; Joanna K Denton; Thomas E Walker; David H Russell
Journal:  Mass Spectrom Rev       Date:  2020-07-01       Impact factor: 10.946

6.  Machine Learning Prediction of Allosteric Drug Activity from Molecular Dynamics.

Authors:  Filippo Marchetti; Elisabetta Moroni; Alessandro Pandini; Giorgio Colombo
Journal:  J Phys Chem Lett       Date:  2021-04-12       Impact factor: 6.475

7.  The Fuzziness of the Molecular World and Its Perspectives.

Authors:  Pier Luigi Gentili
Journal:  Molecules       Date:  2018-08-19       Impact factor: 4.411

8.  Norstictic Acid Is a Selective Allosteric Transcriptional Regulator.

Authors:  Julie M Garlick; Steven M Sturlis; Paul A Bruno; Joel A Yates; Amanda L Peiffer; Yejun Liu; Laura Goo; LiWei Bao; Samantha N De Salle; Giselle Tamayo-Castillo; Charles L Brooks; Sofia D Merajver; Anna K Mapp
Journal:  J Am Chem Soc       Date:  2021-06-17       Impact factor: 15.419

9.  Identification of β-strand mediated protein-protein interaction inhibitors using ligand-directed fragment ligation.

Authors:  Zsófia Hegedüs; Fruzsina Hóbor; Deborah K Shoemark; Sergio Celis; Lu-Yun Lian; Chi H Trinh; Richard B Sessions; Thomas A Edwards; Andrew J Wilson
Journal:  Chem Sci       Date:  2021-01-06       Impact factor: 9.825

10.  Towards a Stochastic Paradigm: From Fuzzy Ensembles to Cellular Functions.

Authors:  Monika Fuxreiter
Journal:  Molecules       Date:  2018-11-17       Impact factor: 4.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.