Literature DB >> 17603477

Genetically encoding unnatural amino acids for cellular and neuronal studies.

Wenyuan Wang1, Jeffrey K Takimoto, Gordon V Louie, Thomas J Baiga, Joseph P Noel, Kuo-Fen Lee, Paul A Slesinger, Lei Wang.   

Abstract

Proteins participate in various biological processes and can be harnessed to probe and control biological events selectively and reproducibly, but the genetic code limits the building block to 20 common amino acids for protein manipulation in living cells. The genetic encoding of unnatural amino acids will remove this restriction and enable new chemical and physical properties to be precisely introduced into proteins. Here we present new strategies for generating orthogonal tRNA-synthetase pairs, which made possible the genetic encoding of diverse unnatural amino acids in different mammalian cells and primary neurons. Using this new methodology, we incorporated unnatural amino acids with extended side chains into the K+ channel Kv1.4, and found that the bulkiness of residues in the inactivation peptide is essential for fast channel inactivation, a finding that had not been possible using conventional mutagenesis. This technique will stimulate and facilitate new molecular studies using tailored unnatural amino acids for cell biology and neurobiology.

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Year:  2007        PMID: 17603477      PMCID: PMC2692200          DOI: 10.1038/nn1932

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  36 in total

Review 1.  Dendritic potassium channels in hippocampal pyramidal neurons.

Authors:  D Johnston; D A Hoffman; J C Magee; N P Poolos; S Watanabe; C M Colbert; M Migliore
Journal:  J Physiol       Date:  2000-05-15       Impact factor: 5.182

Review 2.  Survey and summary: transcription by RNA polymerases I and III.

Authors:  M R Paule; R J White
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

3.  Potassium channel receptor site for the inactivation gate and quaternary amine inhibitors.

Authors:  M Zhou; J H Morais-Cabral; S Mann; R MacKinnon
Journal:  Nature       Date:  2001-06-07       Impact factor: 49.962

Review 4.  Semisynthesis of proteins by expressed protein ligation.

Authors:  Tom W Muir
Journal:  Annu Rev Biochem       Date:  2003-02-27       Impact factor: 23.643

5.  Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells.

Authors:  Kensaku Sakamoto; Akiko Hayashi; Ayako Sakamoto; Daisuke Kiga; Hiroshi Nakayama; Akiko Soma; Takatsugu Kobayashi; Makoto Kitabatake; Koji Takio; Kazuki Saito; Mikako Shirouzu; Ichiro Hirao; Shigeyuki Yokoyama
Journal:  Nucleic Acids Res       Date:  2002-11-01       Impact factor: 16.971

6.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

7.  An unusually compact external promoter for RNA polymerase III transcription of the human H1RNA gene.

Authors:  E Myslinski; J C Amé; A Krol; P Carbon
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

8.  A general approach for the generation of orthogonal tRNAs.

Authors:  L Wang; P G Schultz
Journal:  Chem Biol       Date:  2001-09

9.  An expanded eukaryotic genetic code.

Authors:  Jason W Chin; T Ashton Cropp; J Christopher Anderson; Mridul Mukherji; Zhiwen Zhang; Peter G Schultz
Journal:  Science       Date:  2003-08-15       Impact factor: 47.728

10.  A genetically encoded fluorescent amino acid.

Authors:  Daniel Summerer; Shuo Chen; Ning Wu; Alexander Deiters; Jason W Chin; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-19       Impact factor: 11.205

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  76 in total

1.  NCAD, a database integrating the intrinsic conformational preferences of non-coded amino acids.

Authors:  Guillem Revilla-López; Juan Torras; David Curcó; Jordi Casanovas; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Piotr Grodzinski; Carlos Alemán
Journal:  J Phys Chem B       Date:  2010-06-03       Impact factor: 2.991

2.  SH3 domain-based phototrapping in living cells reveals Rho family GAP signaling complexes.

Authors:  Hirokazu Okada; Akiyoshi Uezu; Frank M Mason; Erik J Soderblom; M Arthur Moseley; Scott H Soderling
Journal:  Sci Signal       Date:  2011-11-29       Impact factor: 8.192

3.  Genetic incorporation of unnatural amino acids into proteins in yeast.

Authors:  Qian Wang; Lei Wang
Journal:  Methods Mol Biol       Date:  2012

Review 4.  Atom-by-atom engineering of voltage-gated ion channels: magnified insights into function and pharmacology.

Authors:  Stephan A Pless; Robin Y Kim; Christopher A Ahern; Harley T Kurata
Journal:  J Physiol       Date:  2015-03-13       Impact factor: 5.182

5.  Photo-cross-linkers incorporated into G-protein-coupled receptors in mammalian cells: a ligand comparison.

Authors:  Irene Coin; Marilyn H Perrin; Wylie W Vale; Lei Wang
Journal:  Angew Chem Int Ed Engl       Date:  2011-07-12       Impact factor: 15.336

6.  Esterification of an unnatural amino acid structurally deviating from canonical amino acids promotes its uptake and incorporation into proteins in mammalian cells.

Authors:  Jeffrey K Takimoto; Zheng Xiang; Ji-Yong Kang; Lei Wang
Journal:  Chembiochem       Date:  2010-11-02       Impact factor: 3.164

Review 7.  Tethering chemistry and K+ channels.

Authors:  Trevor J Morin; William R Kobertz
Journal:  J Biol Chem       Date:  2008-06-09       Impact factor: 5.157

8.  Ligand-directed tosyl chemistry for protein labeling in vivo.

Authors:  Shinya Tsukiji; Masayoshi Miyagawa; Yousuke Takaoka; Tomonori Tamura; Itaru Hamachi
Journal:  Nat Chem Biol       Date:  2009-03-29       Impact factor: 15.040

9.  Light-induced protein translocation by genetically encoded unnatural amino acid in Caenorhabditis elegans.

Authors:  Hao Chang; Mei Han; Wenming Huang; Guifeng Wei; Juanjuan Chen; Peng R Chen; Runsheng Chen; Junlong Zhang; Tao Xu; Pingyong Xu
Journal:  Protein Cell       Date:  2013-12       Impact factor: 14.870

Review 10.  Incorporation of Non-Canonical Amino Acids.

Authors:  Lilia Leisle; Francis Valiyaveetil; Ryan A Mehl; Christopher A Ahern
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

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