Literature DB >> 31937588

Oxygen-dependent asparagine hydroxylation of the ubiquitin-associated (UBA) domain in Cezanne regulates ubiquitin binding.

Julia Mader1, Jessica Huber2, Florian Bonn1, Volker Dötsch2, Vladimir V Rogov2, Anja Bremm3.   

Abstract

Deubiquitinases (DUBs) are vital for the regulation of ubiquitin signals, and both catalytic activity of and target recruitment by DUBs need to be tightly controlled. Here, we identify asparagine hydroxylation as a novel posttranslational modification involved in the regulation of Cezanne (also known as OTU domain-containing protein 7B (OTUD7B)), a DUB that controls key cellular functions and signaling pathways. We demonstrate that Cezanne is a substrate for factor inhibiting HIF1 (FIH1)- and oxygen-dependent asparagine hydroxylation. We found that FIH1 modifies Asn35 within the uncharacterized N-terminal ubiquitin-associated (UBA)-like domain of Cezanne (UBACez), which lacks conserved UBA domain properties. We show that UBACez binds Lys11-, Lys48-, Lys63-, and Met1-linked ubiquitin chains in vitro, establishing UBACez as a functional ubiquitin-binding domain. Our findings also reveal that the interaction of UBACez with ubiquitin is mediated via a noncanonical surface and that hydroxylation of Asn35 inhibits ubiquitin binding. Recently, it has been suggested that Cezanne recruitment to specific target proteins depends on UBACez Our results indicate that UBACez can indeed fulfill this role as regulatory domain by binding various ubiquitin chain types. They also uncover that this interaction with ubiquitin, and thus with modified substrates, can be modulated by oxygen-dependent asparagine hydroxylation, suggesting that Cezanne is regulated by oxygen levels.
© 2020 Mader et al.

Entities:  

Keywords:  Cezanne; FIH1; OTU domain-containing protein 7B (OTUD7B); UBA domain; deubiquitinase (DUB); deubiquitylation (deubiquitination); hydroxylation; nuclear magnetic resonance (NMR); posttranslational modification (PTM); protein-protein interaction; ubiquitin

Mesh:

Substances:

Year:  2020        PMID: 31937588      PMCID: PMC7039550          DOI: 10.1074/jbc.RA119.010315

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  43 in total

1.  Solution structures of UBA domains reveal a conserved hydrophobic surface for protein-protein interactions.

Authors:  Thomas D Mueller; Juli Feigon
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

2.  A universal expression tag for structural and functional studies of proteins.

Authors:  Vladimir V Rogov; Alexis Rozenknop; Natalia Yu Rogova; Frank Löhr; Suhas Tikole; Victor Jaravine; Peter Güntert; Ivan Dikic; Volker Dötsch
Journal:  Chembiochem       Date:  2012-03-20       Impact factor: 3.164

3.  Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins.

Authors:  Gen Matsumoto; Koji Wada; Misako Okuno; Masaru Kurosawa; Nobuyuki Nukina
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4.  A global survey of CRM1-dependent nuclear export sequences in the human deubiquitinase family.

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Journal:  Biochem J       Date:  2012-01-01       Impact factor: 3.857

5.  Oxygen-dependent hydroxylation by FIH regulates the TRPV3 ion channel.

Authors:  Sarah Karttunen; Michael Duffield; Nathan R Scrimgeour; Lauren Squires; Wai Li Lim; Mark L Dallas; Jason L Scragg; Johana Chicher; Keyur A Dave; Murray L Whitelaw; Chris Peers; Jeffrey J Gorman; Jonathan M Gleadle; Grigori Y Rychkov; Daniel J Peet
Journal:  J Cell Sci       Date:  2014-11-20       Impact factor: 5.285

Review 6.  Breaking the chains: deubiquitylating enzyme specificity begets function.

Authors:  Michael J Clague; Sylvie Urbé; David Komander
Journal:  Nat Rev Mol Cell Biol       Date:  2019-06       Impact factor: 94.444

7.  Molecular basis of Lys11-polyubiquitin specificity in the deubiquitinase Cezanne.

Authors:  Yogesh Kulathu; Monique P C Mulder; Tycho E T Mevissen; Paul P Geurink; Sarah L Maslen; Malte Gersch; Paul R Elliott; John E Burke; Bianca D M van Tol; Masato Akutsu; Farid El Oualid; Masato Kawasaki; Stefan M V Freund; Huib Ovaa; David Komander
Journal:  Nature       Date:  2016-10-12       Impact factor: 49.962

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Authors:  John G Doench; Nicolo Fusi; Meagan Sullender; Mudra Hegde; Emma W Vaimberg; Jennifer Listgarten; Katherine F Donovan; Ian Smith; Zuzana Tothova; Craig Wilen; Robert Orchard; Herbert W Virgin; David E Root
Journal:  Nat Biotechnol       Date:  2016-01-18       Impact factor: 54.908

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10.  Inhibition of Canonical NF-κB Signaling by a Small Molecule Targeting NEMO-Ubiquitin Interaction.

Authors:  Michelle Vincendeau; Kamyar Hadian; Ana C Messias; Jara K Brenke; Jenny Halander; Richard Griesbach; Ute Greczmiel; Arianna Bertossi; Ralf Stehle; Daniel Nagel; Katrin Demski; Hana Velvarska; Dierk Niessing; Arie Geerlof; Michael Sattler; Daniel Krappmann
Journal:  Sci Rep       Date:  2016-01-07       Impact factor: 4.379

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  4 in total

1.  OTUD7B deubiquitinates SQSTM1/p62 and promotes IRF3 degradation to regulate antiviral immunity.

Authors:  Weihong Xie; Shuo Tian; Jiahui Yang; Sihui Cai; Shouheng Jin; Tao Zhou; Yaoxing Wu; Zhiyun Chen; Yanqin Ji; Jun Cui
Journal:  Autophagy       Date:  2022-01-31       Impact factor: 13.391

2.  Cezanne is a critical regulator of pathological arterial remodelling by targeting β-catenin signalling.

Authors:  Weiwei An; Le A Luong; Neil P Bowden; Mei Yang; Wei Wu; Xinmiao Zhou; Chenxin Liu; Kaiyuan Niu; Jun Luo; Cheng Zhang; Xiaolei Sun; Robin Poston; Li Zhang; Paul C Evans; Qingzhong Xiao
Journal:  Cardiovasc Res       Date:  2022-01-29       Impact factor: 13.081

3.  miR-125 family regulates XIRP1 and FIH in response to myocardial infarction.

Authors:  Allison Lesher Williams; Vedbar S Khadka; Ma C T Anagaran; Katie Lee; Abigail Avelar; Youping Deng; Ralph V Shohet
Journal:  Physiol Genomics       Date:  2020-07-27       Impact factor: 3.107

Review 4.  Post-Translational Modifications of Deubiquitinating Enzymes: Expanding the Ubiquitin Code.

Authors:  Yanfeng Wang; Feng Wang
Journal:  Front Pharmacol       Date:  2021-06-10       Impact factor: 5.810

  4 in total

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