Literature DB >> 27642379

Persistent Homology Analysis of Brain Artery Trees.

Paul Bendich1, J S Marron2, Ezra Miller1, Alex Pieloch1, Sean Skwerer3.   

Abstract

New representations of tree-structured data objects, using ideas from topological data analysis, enable improved statistical analyses of a population of brain artery trees. A number of representations of each data tree arise from persistence diagrams that quantify branching and looping of vessels at multiple scales. Novel approaches to the statistical analysis, through various summaries of the persistence diagrams, lead to heightened correlations with covariates such as age and sex, relative to earlier analyses of this data set. The correlation with age continues to be significant even after controlling for correlations from earlier significant summaries.

Entities:  

Keywords:  Persistent homology; angiography; statistics; topological data analysis; tree-structured data

Year:  2016        PMID: 27642379      PMCID: PMC5026243          DOI: 10.1214/15-AOAS886

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  6 in total

1.  Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction.

Authors:  Stephen R Aylward; Elizabeth Bullitt
Journal:  IEEE Trans Med Imaging       Date:  2002-02       Impact factor: 10.048

2.  The effects of healthy aging on intracerebral blood vessels visualized by magnetic resonance angiography.

Authors:  Elizabeth Bullitt; Donglin Zeng; Benedicte Mortamet; Arpita Ghosh; Stephen R Aylward; Weili Lin; Bonita L Marks; Keith Smith
Journal:  Neurobiol Aging       Date:  2010-02       Impact factor: 4.673

3.  Topo-geometric filtration scheme for geometric active contours and level sets: application to cerebrovascular segmentation.

Authors:  Helena Molina-Abril; Alejandro F Frangi
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

4.  Toward a theory of statistical tree-shape analysis.

Authors:  Aasa Feragen; Pechin Lo; Marleen de Bruijne; Mads Nielsen; François Lauze
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-08       Impact factor: 6.226

5.  Functional Data Analysis of Tree Data Objects.

Authors:  Dan Shen; Haipeng Shen; Shankar Bhamidi; Yolanda Muñoz Maldonado; Yongdai Kim; J S Marron
Journal:  J Comput Graph Stat       Date:  2014       Impact factor: 2.302

6.  Digital reconstruction and morphometric analysis of human brain arterial vasculature from magnetic resonance angiography.

Authors:  Susan N Wright; Peter Kochunov; Fernando Mut; Maurizio Bergamino; Kerry M Brown; John C Mazziotta; Arthur W Toga; Juan R Cebral; Giorgio A Ascoli
Journal:  Neuroimage       Date:  2013-05-28       Impact factor: 6.556

  6 in total
  23 in total

1.  Metrics for comparing neuronal tree shapes based on persistent homology.

Authors:  Yanjie Li; Dingkang Wang; Giorgio A Ascoli; Partha Mitra; Yusu Wang
Journal:  PLoS One       Date:  2017-08-15       Impact factor: 3.240

2.  Modeling and replicating statistical topology and evidence for CMB nonhomogeneity.

Authors:  Robert J Adler; Sarit Agami; Pratyush Pranav
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-25       Impact factor: 11.205

3.  Multiscale topology characterizes dynamic tumor vascular networks.

Authors:  Bernadette J Stolz; Jakob Kaeppler; Bostjan Markelc; Franziska Braun; Florian Lipsmeier; Ruth J Muschel; Helen M Byrne; Heather A Harrington
Journal:  Sci Adv       Date:  2022-06-10       Impact factor: 14.957

4.  diproperm: An R Package for the DiProPerm Test.

Authors:  Andrew G Allmon; J S Marron; Michael G Hudgens
Journal:  R J       Date:  2021-08-17       Impact factor: 1.673

5.  Topological Approximate Bayesian Computation for Parameter Inference of an Angiogenesis Model.

Authors:  Thomas Thorne; Paul D W Kirk; Heather A Harrington
Journal:  Bioinformatics       Date:  2022-02-22       Impact factor: 6.931

6.  Topological Data Analysis of Single-Trial Electroencephalographic Signals.

Authors:  Yuan Wang; Hernando Ombao; Moo K Chung
Journal:  Ann Appl Stat       Date:  2018-09-11       Impact factor: 2.083

7.  Lung Topology Characteristics in patients with Chronic Obstructive Pulmonary Disease.

Authors:  Francisco Belchi; Mariam Pirashvili; Joy Conway; Michael Bennett; Ratko Djukanovic; Jacek Brodzki
Journal:  Sci Rep       Date:  2018-03-28       Impact factor: 4.379

8.  Persistent homology as a new method of the assessment of heart rate variability.

Authors:  Grzegorz Graff; Beata Graff; Paweł Pilarczyk; Grzegorz Jabłoński; Dariusz Gąsecki; Krzysztof Narkiewicz
Journal:  PLoS One       Date:  2021-07-22       Impact factor: 3.240

Review 9.  Two's company, three (or more) is a simplex : Algebraic-topological tools for understanding higher-order structure in neural data.

Authors:  Chad Giusti; Robert Ghrist; Danielle S Bassett
Journal:  J Comput Neurosci       Date:  2016-06-11       Impact factor: 1.621

10.  A topological analysis of targeted In-111 uptake in SPECT images of murine tumors.

Authors:  David B Damiano; Melissa R McGuirl
Journal:  J Math Biol       Date:  2017-10-05       Impact factor: 2.259

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