Literature DB >> 35687679

Multiscale topology characterizes dynamic tumor vascular networks.

Bernadette J Stolz1, Jakob Kaeppler2, Bostjan Markelc2,3, Franziska Braun4, Florian Lipsmeier5, Ruth J Muschel2, Helen M Byrne1, Heather A Harrington1,6.   

Abstract

Advances in imaging techniques enable high-resolution three-dimensional (3D) visualization of vascular networks over time and reveal abnormal structural features such as twists and loops, and their quantification is an active area of research. Here, we showcase how topological data analysis, the mathematical field that studies the "shape" of data, can characterize the geometric, spatial, and temporal organization of vascular networks. We propose two topological lenses to study vasculature, which capture inherent multiscale features and vessel connectivity, and surpass the single-scale analysis of existing methods. We analyze images collected using intravital and ultramicroscopy modalities and quantify spatiotemporal variation of twists, loops, and avascular regions (voids) in 3D vascular networks. This topological approach validates and quantifies known qualitative trends such as dynamic changes in tortuosity and loops in response to antibodies that modulate vessel sprouting; furthermore, it quantifies the effect of radiotherapy on vessel architecture.

Entities:  

Year:  2022        PMID: 35687679      PMCID: PMC9187234          DOI: 10.1126/sciadv.abm2456

Source DB:  PubMed          Journal:  Sci Adv        ISSN: 2375-2548            Impact factor:   14.957


  45 in total

1.  Clique topology reveals intrinsic geometric structure in neural correlations.

Authors:  Chad Giusti; Eva Pastalkova; Carina Curto; Vladimir Itskov
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-20       Impact factor: 11.205

Review 2.  Trastuzumab--mechanism of action and use in clinical practice.

Authors:  Clifford A Hudis
Journal:  N Engl J Med       Date:  2007-07-05       Impact factor: 91.245

3.  Multispectral fluorescence ultramicroscopy: three-dimensional visualization and automatic quantification of tumor morphology, drug penetration, and antiangiogenic treatment response.

Authors:  Michael Dobosz; Vasilis Ntziachristos; Werner Scheuer; Steffen Strobel
Journal:  Neoplasia       Date:  2014-01       Impact factor: 5.715

Review 4.  Tumor angiogenesis: therapeutic implications.

Authors:  J Folkman
Journal:  N Engl J Med       Date:  1971-11-18       Impact factor: 91.245

Review 5.  Normalization of the vasculature for treatment of cancer and other diseases.

Authors:  Shom Goel; Dan G Duda; Lei Xu; Lance L Munn; Yves Boucher; Dai Fukumura; Rakesh K Jain
Journal:  Physiol Rev       Date:  2011-07       Impact factor: 37.312

Review 6.  Radiation-induced vascular damage in tumors: implications of vascular damage in ablative hypofractionated radiotherapy (SBRT and SRS).

Authors:  Heon Joo Park; Robert J Griffin; Susanta Hui; Seymour H Levitt; Chang W Song
Journal:  Radiat Res       Date:  2012-01-09       Impact factor: 2.841

7.  Topological data analysis of contagion maps for examining spreading processes on networks.

Authors:  Dane Taylor; Florian Klimm; Heather A Harrington; Miroslav Kramár; Konstantin Mischaikow; Mason A Porter; Peter J Mucha
Journal:  Nat Commun       Date:  2015-07-21       Impact factor: 14.919

8.  Denoising large-scale biological data using network filters.

Authors:  Andrew J Kavran; Aaron Clauset
Journal:  BMC Bioinformatics       Date:  2021-03-25       Impact factor: 3.169

9.  A Topological Representation of Branching Neuronal Morphologies.

Authors:  Lida Kanari; Paweł Dłotko; Martina Scolamiero; Ran Levi; Julian Shillcock; Kathryn Hess; Henry Markram
Journal:  Neuroinformatics       Date:  2018-01

10.  Topological data analysis of zebrafish patterns.

Authors:  Melissa R McGuirl; Alexandria Volkening; Björn Sandstede
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-25       Impact factor: 11.205

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  1 in total

1.  Quantification of vascular networks in photoacoustic mesoscopy.

Authors:  Emma L Brown; Thierry L Lefebvre; Paul W Sweeney; Bernadette J Stolz; Janek Gröhl; Lina Hacker; Ziqiang Huang; Dominique-Laurent Couturier; Heather A Harrington; Helen M Byrne; Sarah E Bohndiek
Journal:  Photoacoustics       Date:  2022-04-20
  1 in total

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