Literature DB >> 25346588

Functional Data Analysis of Tree Data Objects.

Dan Shen1, Haipeng Shen2, Shankar Bhamidi2, Yolanda Muñoz Maldonado3, Yongdai Kim4, J S Marron5.   

Abstract

Data analysis on non-Euclidean spaces, such as tree spaces, can be challenging. The main contribution of this paper is establishment of a connection between tree data spaces and the well developed area of Functional Data Analysis (FDA), where the data objects are curves. This connection comes through two tree representation approaches, the Dyck path representation and the branch length representation. These representations of trees in Euclidean spaces enable us to exploit the power of FDA to explore statistical properties of tree data objects. A major challenge in the analysis is the sparsity of tree branches in a sample of trees. We overcome this issue by using a tree pruning technique that focuses the analysis on important underlying population structures. This method parallels scale-space analysis in the sense that it reveals statistical properties of tree structured data over a range of scales. The effectiveness of these new approaches is demonstrated by some novel results obtained in the analysis of brain artery trees. The scale space analysis reveals a deeper relationship between structure and age. These methods are the first to find a statistically significant gender difference.

Entities:  

Keywords:  DiProPerm; Dyck path; Support tree; Tree pruning; ranch length

Year:  2014        PMID: 25346588      PMCID: PMC4204425          DOI: 10.1080/10618600.2013.786943

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  6 in total

1.  Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction.

Authors:  Stephen R Aylward; Elizabeth Bullitt
Journal:  IEEE Trans Med Imaging       Date:  2002-02       Impact factor: 10.048

2.  A tree kernel to analyse phylogenetic profiles.

Authors:  Jean-Philippe Vert
Journal:  Bioinformatics       Date:  2002       Impact factor: 6.937

3.  Magnetic resonance angiography.

Authors:  C L Dumoulin; H R Hart
Journal:  Radiology       Date:  1986-12       Impact factor: 11.105

4.  Weighted Distance Weighted Discrimination and Its Asymptotic Properties.

Authors:  Xingye Qiao; Hao Helen Zhang; Yufeng Liu; Michael J Todd; J S Marron
Journal:  J Am Stat Assoc       Date:  2010-03-01       Impact factor: 5.033

5.  Shrinkage estimation for functional principal component scores with application to the population kinetics of plasma folate.

Authors:  Fang Yao; Hans-Georg Müller; Andrew J Clifford; Steven R Dueker; Jennifer Follett; Yumei Lin; Bruce A Buchholz; John S Vogel
Journal:  Biometrics       Date:  2003-09       Impact factor: 2.571

6.  Glycan classification with tree kernels.

Authors:  Yoshihiro Yamanishi; Francis Bach; Jean-Philippe Vert
Journal:  Bioinformatics       Date:  2007-03-07       Impact factor: 6.937

  6 in total
  2 in total

1.  Persistent Homology Analysis of Brain Artery Trees.

Authors:  Paul Bendich; J S Marron; Ezra Miller; Alex Pieloch; Sean Skwerer
Journal:  Ann Appl Stat       Date:  2016-03-25       Impact factor: 2.083

2.  Association testing for binary trees-A Markov branching process approach.

Authors:  Xiaowei Wu; Hongxiao Zhu
Journal:  Stat Med       Date:  2022-03-09       Impact factor: 2.497

  2 in total

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