Literature DB >> 29078301

Modeling and replicating statistical topology and evidence for CMB nonhomogeneity.

Robert J Adler1, Sarit Agami2, Pratyush Pranav2.   

Abstract

Under the banner of "big data," the detection and classification of structure in extremely large, high-dimensional, data sets are two of the central statistical challenges of our times. Among the most intriguing new approaches to this challenge is "TDA," or "topological data analysis," one of the primary aims of which is providing nonmetric, but topologically informative, preanalyses of data which make later, more quantitative, analyses feasible. While TDA rests on strong mathematical foundations from topology, in applications, it has faced challenges due to difficulties in handling issues of statistical reliability and robustness, often leading to an inability to make scientific claims with verifiable levels of statistical confidence. We propose a methodology for the parametric representation, estimation, and replication of persistence diagrams, the main diagnostic tool of TDA. The power of the methodology lies in the fact that even if only one persistence diagram is available for analysis-the typical case for big data applications-the replications permit conventional statistical hypothesis testing. The methodology is conceptually simple and computationally practical, and provides a broadly effective statistical framework for persistence diagram TDA analysis. We demonstrate the basic ideas on a toy example, and the power of the parametric approach to TDA modeling in an analysis of cosmic microwave background (CMB) nonhomogeneity. Published under the PNAS license.

Keywords:  CMB nonhomogeneity; Gibbs measures; persistence diagrams; statistical topology; topological data analysis

Year:  2017        PMID: 29078301      PMCID: PMC5692542          DOI: 10.1073/pnas.1706885114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  5 in total

1.  Clique topology reveals intrinsic geometric structure in neural correlations.

Authors:  Chad Giusti; Eva Pastalkova; Carina Curto; Vladimir Itskov
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-20       Impact factor: 11.205

2.  Topology of viral evolution.

Authors:  Joseph Minhow Chan; Gunnar Carlsson; Raul Rabadan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-29       Impact factor: 11.205

3.  Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival.

Authors:  Monica Nicolau; Arnold J Levine; Gunnar Carlsson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

4.  Hierarchical structures of amorphous solids characterized by persistent homology.

Authors:  Yasuaki Hiraoka; Takenobu Nakamura; Akihiko Hirata; Emerson G Escolar; Kaname Matsue; Yasumasa Nishiura
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-13       Impact factor: 11.205

5.  Persistent Homology Analysis of Brain Artery Trees.

Authors:  Paul Bendich; J S Marron; Ezra Miller; Alex Pieloch; Sean Skwerer
Journal:  Ann Appl Stat       Date:  2016-03-25       Impact factor: 2.083

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.