Literature DB >> 27545112

Gd(iii) and Mn(ii) complexes for dynamic nuclear polarization: small molecular chelate polarizing agents and applications with site-directed spin labeling of proteins.

Monu Kaushik1, Thorsten Bahrenberg, Thach V Can, Marc A Caporini, Robert Silvers, Jörg Heiliger, Albert A Smith, Harald Schwalbe, Robert G Griffin, Björn Corzilius.   

Abstract

We investigate complexes of two paramagnetic metal ions Gd3+ and Mn2+ to serve as polarizing agents for solid-state dynamic nuclear polarization (DNP) of 1H, 13C, and 15N at magnetic fields of 5, 9.4, and 14.1 T. Both ions are half-integer high-spin systems with a zero-field splitting and therefore exhibit a broadening of the mS = -1/2 ↔ +1/2 central transition which scales inversely with the external field strength. We investigate experimentally the influence of the chelator molecule, strong hyperfine coupling to the metal nucleus, and deuteration of the bulk matrix on DNP properties. At small Gd-DOTA concentrations the narrow central transition allows us to polarize nuclei with small gyromagnetic ratio such as 13C and even 15N via the solid effect. We demonstrate that enhancements observed are limited by the available microwave power and that large enhancement factors of >100 (for 1H) and on the order of 1000 (for 13C) can be achieved in the saturation limit even at 80 K. At larger Gd(iii) concentrations (≥10 mM) where dipolar couplings between two neighboring Gd3+ complexes become substantial a transition towards cross effect as dominating DNP mechanism is observed. Furthermore, the slow spin-diffusion between 13C and 15N, respectively, allows for temporally resolved observation of enhanced polarization spreading from nuclei close to the paramagnetic ion towards nuclei further removed. Subsequently, we present preliminary DNP experiments on ubiquitin by site-directed spin-labeling with Gd3+ chelator tags. The results hold promise towards applications of such paramagnetically labeled proteins for DNP applications in biophysical chemistry and/or structural biology.

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Year:  2016        PMID: 27545112      PMCID: PMC5053914          DOI: 10.1039/c6cp04623a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  87 in total

1.  Dynamic nuclear polarization-enhanced solid-state NMR spectroscopy of GNNQQNY nanocrystals and amyloid fibrils.

Authors:  Galia T Debelouchina; Marvin J Bayro; Patrick C A van der Wel; Marc A Caporini; Alexander B Barnes; Melanie Rosay; Werner E Maas; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

2.  Characterization of membrane proteins in isolated native cellular membranes by dynamic nuclear polarization solid-state NMR spectroscopy without purification and reconstitution.

Authors:  Tomas Jacso; W Trent Franks; Honor Rose; Uwe Fink; Jana Broecker; Sandro Keller; Hartmut Oschkinat; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-23       Impact factor: 15.336

3.  Surface enhanced NMR spectroscopy by dynamic nuclear polarization.

Authors:  Anne Lesage; Moreno Lelli; David Gajan; Marc A Caporini; Veronika Vitzthum; Pascal Miéville; Johan Alauzun; Arthur Roussey; Chloé Thieuleux; Ahmad Mehdi; Geoffrey Bodenhausen; Christophe Copéret; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

4.  Gadolinium tagging for high-precision measurements of 6 nm distances in protein assemblies by EPR.

Authors:  Hiromasa Yagi; Debamalya Banerjee; Bim Graham; Thomas Huber; Daniella Goldfarb; Gottfried Otting
Journal:  J Am Chem Soc       Date:  2011-06-16       Impact factor: 15.419

5.  Polarization-enhanced NMR spectroscopy of biomolecules in frozen solution.

Authors:  D A Hall; D C Maus; G J Gerfen; S J Inati; L R Becerra; F W Dahlquist; R G Griffin
Journal:  Science       Date:  1997-05-09       Impact factor: 47.728

6.  Successive Stages of Amyloid-β Self-Assembly Characterized by Solid-State Nuclear Magnetic Resonance with Dynamic Nuclear Polarization.

Authors:  Alexey Potapov; Wai-Ming Yau; Rodolfo Ghirlando; Kent R Thurber; Robert Tycko
Journal:  J Am Chem Soc       Date:  2015-06-19       Impact factor: 15.419

7.  Natural abundance 15N NMR by dynamic nuclear polarization: fast analysis of binding sites of a novel amine-carboxyl-linked immobilized dirhodium catalyst.

Authors:  Torsten Gutmann; Jiquan Liu; Niels Rothermel; Yeping Xu; Eva Jaumann; Mayke Werner; Hergen Breitzke; Snorri T Sigurdsson; Gerd Buntkowsky
Journal:  Chemistry       Date:  2015-01-23       Impact factor: 5.236

8.  Quantum mechanical theory of dynamic nuclear polarization in solid dielectrics.

Authors:  Kan-Nian Hu; Galia T Debelouchina; Albert A Smith; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

9.  High-field 13C dynamic nuclear polarization with a radical mixture.

Authors:  Vladimir K Michaelis; Albert A Smith; Björn Corzilius; Olesya Haze; Timothy M Swager; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2013-02-13       Impact factor: 15.419

10.  NMR studies of primary and secondary sites of parvalbumins using the two paramagnetic probes Gd (III) and Mn (II).

Authors:  A Cavé; M F Daures; J Parello; A Saint-Yves; R Sempere
Journal:  Biochimie       Date:  1979       Impact factor: 4.079

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  17 in total

1.  Persistent Radicals of Self-assembled Benzophenone bis-Urea Macrocycles: Characterization and Application as a Polarizing Agent for Solid-state DNP MAS Spectroscopy.

Authors:  Baillie A DeHaven; John T Tokarski; Arthur A Korous; Frederic Mentink-Vigier; Thomas M Makris; Alexander M Brugh; Malcolm D E Forbes; Johan van Tol; Clifford R Bowers; Linda S Shimizu
Journal:  Chemistry       Date:  2017-05-19       Impact factor: 5.236

Review 2.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

3.  Dynamic Nuclear Polarization Signal Enhancement with High-Affinity Biradical Tags.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yongjun Li; M Francesca Ottaviani; Virginia Cornish; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-02-06       Impact factor: 2.991

4.  Adiabatic Solid Effect.

Authors:  Kong Ooi Tan; Ralph T Weber; Thach V Can; Robert G Griffin
Journal:  J Phys Chem Lett       Date:  2020-04-20       Impact factor: 6.475

5.  Direct dynamic nuclear polarization of 15N and 13C spins at 14.1 T using a trityl radical and magic angle spinning.

Authors:  Xiaoling Wang; Bethany G Caulkins; Gwladys Riviere; Leonard J Mueller; Frederic Mentink-Vigier; Joanna R Long
Journal:  Solid State Nucl Magn Reson       Date:  2019-04-02       Impact factor: 2.293

Review 6.  Use of paramagnetic systems to speed-up NMR data acquisition and for structural and dynamic studies.

Authors:  Vojč Kocman; Giacomo M Di Mauro; Gianluigi Veglia; Ayyalusamy Ramamoorthy
Journal:  Solid State Nucl Magn Reson       Date:  2019-07-12       Impact factor: 2.293

7.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

8.  Site-specific dynamic nuclear polarization in a Gd(III)-labeled protein.

Authors:  Jörg Heiliger; Tobias Matzel; Erhan Can Çetiner; Harald Schwalbe; Georg Kuenze; Björn Corzilius
Journal:  Phys Chem Chem Phys       Date:  2020-11-18       Impact factor: 3.676

9.  TinyPols: a family of water-soluble binitroxides tailored for dynamic nuclear polarization enhanced NMR spectroscopy at 18.8 and 21.1 T.

Authors:  Alicia Lund; Gilles Casano; Georges Menzildjian; Monu Kaushik; Gabriele Stevanato; Maxim Yulikov; Ribal Jabbour; Dorothea Wisser; Marc Renom-Carrasco; Chloé Thieuleux; Florian Bernada; Hakim Karoui; Didier Siri; Melanie Rosay; Ivan V Sergeyev; David Gajan; Moreno Lelli; Lyndon Emsley; Olivier Ouari; Anne Lesage
Journal:  Chem Sci       Date:  2020-02-05       Impact factor: 9.825

Review 10.  Targeted DNP for biomolecular solid-state NMR.

Authors:  Diego Gauto; Ons Dakhlaoui; Ildefonso Marin-Montesinos; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Sci       Date:  2021-03-23       Impact factor: 9.825

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