Literature DB >> 28099013

Dynamic Nuclear Polarization Signal Enhancement with High-Affinity Biradical Tags.

Rivkah Rogawski1, Ivan V Sergeyev1, Yongjun Li1, M Francesca Ottaviani2, Virginia Cornish1, Ann E McDermott1.   

Abstract

Dynamic nuclear polarization is an emerging technique for sensitizing solid-state NMR experiments by transferring polarization from electrons to nuclei. Stable biradicals, the polarization source for the cross effect mechanism, are typically codissolved at millimolar concentrations with proteins of interest. Here we describe the high-affinity biradical tag TMP-T, created by covalently linking trimethoprim, a nanomolar affinity ligand of dihydrofolate reductase (DHFR), to the biradical polarizing agent TOTAPOL. With TMP-T bound to DHFR, large enhancements of the protein spectrum are observed, comparable to when TOTAPOL is codissolved with the protein. In contrast to TOTAPOL, the tight binding TMP-T can be added stoichiometrically at radical concentrations orders of magnitude lower than in previously described preparations. Benefits of the reduced radical concentration include reduced spectral bleaching, reduced chemical perturbation of the sample, and the ability to selectively enhance signals for the protein of interest.

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Year:  2017        PMID: 28099013      PMCID: PMC5518711          DOI: 10.1021/acs.jpcb.6b09021

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  54 in total

1.  SnapShot: key numbers in biology.

Authors:  Uri Moran; Rob Phillips; Ron Milo
Journal:  Cell       Date:  2010-06-25       Impact factor: 41.582

2.  The effect of biradical concentration on the performance of DNP-MAS-NMR.

Authors:  Sascha Lange; Arne H Linden; Umit Akbey; W Trent Franks; Nikolaus M Loening; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Magn Reson       Date:  2012-01-08       Impact factor: 2.229

3.  Paramagnet induced signal quenching in MAS-DNP experiments in frozen homogeneous solutions.

Authors:  Björn Corzilius; Loren B Andreas; Albert A Smith; Qing Zhe Ni; Robert G Griffin
Journal:  J Magn Reson       Date:  2013-12-07       Impact factor: 2.229

4.  Quantum mechanical theory of dynamic nuclear polarization in solid dielectrics.

Authors:  Kan-Nian Hu; Galia T Debelouchina; Albert A Smith; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

5.  A method for dynamic nuclear polarization enhancement of membrane proteins.

Authors:  Adam N Smith; Marc A Caporini; Gail E Fanucci; Joanna R Long
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-10       Impact factor: 15.336

6.  Dynamic Nuclear Polarization as an Enabling Technology for Solid State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Adam N Smith; Joanna R Long
Journal:  Anal Chem       Date:  2015-12-17       Impact factor: 6.986

7.  Cysteine-Specific Labeling of Proteins with a Nitroxide Biradical for Dynamic Nuclear Polarization NMR.

Authors:  Maxim A Voinov; Daryl B Good; Meaghan E Ward; Sergey Milikisiyants; Antonin Marek; Marc A Caporini; Melanie Rosay; Rachel A Munro; Milena Ljumovic; Leonid S Brown; Vladimir Ladizhansky; Alex I Smirnov
Journal:  J Phys Chem B       Date:  2015-07-31       Impact factor: 2.991

8.  High-Field Dynamic Nuclear Polarization for Solid and Solution Biological NMR.

Authors:  A B Barnes; G De Paëpe; P C A van der Wel; K-N Hu; C-G Joo; V S Bajaj; M L Mak-Jurkauskas; J R Sirigiri; J Herzfeld; R J Temkin; R G Griffin
Journal:  Appl Magn Reson       Date:  2008-08       Impact factor: 0.831

9.  High field dynamic nuclear polarization NMR with surfactant sheltered biradicals.

Authors:  Matthew K Kiesewetter; Vladimir K Michaelis; Joseph J Walish; Robert G Griffin; Timothy M Swager
Journal:  J Phys Chem B       Date:  2014-02-07       Impact factor: 2.991

10.  Protein abundance profiling of the Escherichia coli cytosol.

Authors:  Yasushi Ishihama; Thorsten Schmidt; Juri Rappsilber; Matthias Mann; F Ulrich Hartl; Michael J Kerner; Dmitrij Frishman
Journal:  BMC Genomics       Date:  2008-02-27       Impact factor: 3.969

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  11 in total

Review 1.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

2.  Targetable Tetrazine-Based Dynamic Nuclear Polarization Agents for Biological Systems.

Authors:  Byung Joon Lim; Bryce E Ackermann; Galia T Debelouchina
Journal:  Chembiochem       Date:  2020-01-21       Impact factor: 3.164

Review 3.  High-sensitivity protein solid-state NMR spectroscopy.

Authors:  Venkata S Mandala; Mei Hong
Journal:  Curr Opin Struct Biol       Date:  2019-04-25       Impact factor: 6.809

4.  Optimizing nitroxide biradicals for cross-effect MAS-DNP: the role of g-tensors' distance.

Authors:  Frédéric Mentink-Vigier
Journal:  Phys Chem Chem Phys       Date:  2020-01-30       Impact factor: 3.676

5.  Stability of the nitroxide biradical AMUPol in intact and lysed mammalian cells.

Authors:  Rupam Ghosh; Rania Dumarieh; Yiling Xiao; Kendra K Frederick
Journal:  J Magn Reson       Date:  2022-01-31       Impact factor: 2.229

6.  NMR Signal Quenching from Bound Biradical Affinity Reagents in DNP Samples.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yinglu Zhang; Timothy H Tran; Yongjun Li; Liang Tong; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-11-29       Impact factor: 2.991

7.  Succinyl-DOTOPA: An effective triradical dopant for low-temperature dynamic nuclear polarization with high solubility in aqueous solvent mixtures at neutral pH.

Authors:  Wai-Ming Yau; Jaekyun Jeon; Robert Tycko
Journal:  J Magn Reson       Date:  2019-12-20       Impact factor: 2.229

8.  Site-specific dynamic nuclear polarization in a Gd(III)-labeled protein.

Authors:  Jörg Heiliger; Tobias Matzel; Erhan Can Çetiner; Harald Schwalbe; Georg Kuenze; Björn Corzilius
Journal:  Phys Chem Chem Phys       Date:  2020-11-18       Impact factor: 3.676

Review 9.  Targeted DNP for biomolecular solid-state NMR.

Authors:  Diego Gauto; Ons Dakhlaoui; Ildefonso Marin-Montesinos; Sabine Hediger; Gaël De Paëpe
Journal:  Chem Sci       Date:  2021-03-23       Impact factor: 9.825

10.  Combined 1H-Detected Solid-State NMR Spectroscopy and Electron Cryotomography to Study Membrane Proteins across Resolutions in Native Environments.

Authors:  Lindsay A Baker; Tessa Sinnige; Pascale Schellenberger; Jeanine de Keyzer; C Alistair Siebert; Arnold J M Driessen; Marc Baldus; Kay Grünewald
Journal:  Structure       Date:  2017-12-14       Impact factor: 5.006

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