Literature DB >> 20454733

Dynamic nuclear polarization-enhanced solid-state NMR spectroscopy of GNNQQNY nanocrystals and amyloid fibrils.

Galia T Debelouchina1, Marvin J Bayro, Patrick C A van der Wel, Marc A Caporini, Alexander B Barnes, Melanie Rosay, Werner E Maas, Robert G Griffin.   

Abstract

Dynamic nuclear polarization (DNP) utilizes the inherently larger polarization of electrons to enhance the sensitivity of conventional solid-state NMR experiments at low temperature. Recent advances in instrumentation development and sample preparation have transformed this field and have opened up new opportunities for its application to biological systems. Here, we present DNP-enhanced (13)C-(13)C and (15)N-(13)C correlation experiments on GNNQQNY nanocrystals and amyloid fibrils acquired at 9.4 T and 100 K and demonstrate that DNP can be used to obtain assignments and site-specific structural information very efficiently. We investigate the influence of temperature on the resolution, molecular conformation, structural integrity and dynamics in these two systems. In addition, we assess the low-temperature performance of two commonly used solid-state NMR experiments, proton-driven spin diffusion (PDSD) and transferred echo double resonance (TEDOR), and discuss their potential as tools for measurement of structurally relevant distances at low temperature in combination with DNP.

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Year:  2010        PMID: 20454733      PMCID: PMC4440577          DOI: 10.1039/c003661g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  31 in total

1.  Resolution and polarization distribution in cryogenic DNP/MAS experiments.

Authors:  Alexander B Barnes; Björn Corzilius; Melody L Mak-Jurkauskas; Loren B Andreas; Vikram S Bajaj; Yoh Matsuki; Marina L Belenky; Johan Lugtenburg; Jagadishwar R Sirigiri; Richard J Temkin; Judith Herzfeld; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

Review 2.  Dynamic nuclear polarization at high magnetic fields.

Authors:  Thorsten Maly; Galia T Debelouchina; Vikram S Bajaj; Kan-Nian Hu; Chan-Gyu Joo; Melody L Mak-Jurkauskas; Jagadishwar R Sirigiri; Patrick C A van der Wel; Judith Herzfeld; Richard J Temkin; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

3.  Dynamic nuclear polarization of amyloidogenic peptide nanocrystals: GNNQQNY, a core segment of the yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Kan-Nian Hu; Józef Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2006-08-23       Impact factor: 15.419

4.  TOTAPOL: a biradical polarizing agent for dynamic nuclear polarization experiments in aqueous media.

Authors:  Changsik Song; Kan-Nian Hu; Chan-Gyu Joo; Timothy M Swager; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2006-09-06       Impact factor: 15.419

5.  Hydrogen bonding and the cryoprotective properties of glycerol/water mixtures.

Authors:  Jennifer L Dashnau; Nathaniel V Nucci; Kim A Sharp; Jane M Vanderkooi
Journal:  J Phys Chem B       Date:  2006-07-13       Impact factor: 2.991

6.  Comparison of hydrogen exchange rates for bovine pancreatic trypsin inhibitor in crystals and in solution.

Authors:  W Gallagher; F Tao; C Woodward
Journal:  Biochemistry       Date:  1992-05-19       Impact factor: 3.162

7.  Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-03-31       Impact factor: 15.419

8.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

9.  High-sensitivity observation of dipolar exchange and NOEs between exchangeable protons in proteins by 3D solid-state NMR spectroscopy.

Authors:  Eric K Paulson; Corey R Morcombe; Vadim Gaponenko; Barbara Dancheck; R Andrew Byrd; Kurt W Zilm
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

10.  High-Field Dynamic Nuclear Polarization for Solid and Solution Biological NMR.

Authors:  A B Barnes; G De Paëpe; P C A van der Wel; K-N Hu; C-G Joo; V S Bajaj; M L Mak-Jurkauskas; J R Sirigiri; J Herzfeld; R J Temkin; R G Griffin
Journal:  Appl Magn Reson       Date:  2008-08       Impact factor: 0.831

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  60 in total

1.  Resolution and polarization distribution in cryogenic DNP/MAS experiments.

Authors:  Alexander B Barnes; Björn Corzilius; Melody L Mak-Jurkauskas; Loren B Andreas; Vikram S Bajaj; Yoh Matsuki; Marina L Belenky; Johan Lugtenburg; Jagadishwar R Sirigiri; Richard J Temkin; Judith Herzfeld; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

2.  Cryogenic solid state NMR studies of fibrils of the Alzheimer's disease amyloid-β peptide: perspectives for DNP.

Authors:  Juan-Miguel Lopez del Amo; Dennis Schneider; Antoine Loquet; Adam Lange; Bernd Reif
Journal:  J Biomol NMR       Date:  2013-06-22       Impact factor: 2.835

3.  Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization.

Authors:  Ivan V Sergeyev; Boris Itin; Rivkah Rogawski; Loren A Day; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

4.  Line-Broadening in Low-Temperature Solid-State NMR Spectra of Fibrils.

Authors:  Thomas Bauer; Claudio Dotta; Livia Balacescu; Julia Gath; Andreas Hunkeler; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-02-04       Impact factor: 2.835

5.  Successive Stages of Amyloid-β Self-Assembly Characterized by Solid-State Nuclear Magnetic Resonance with Dynamic Nuclear Polarization.

Authors:  Alexey Potapov; Wai-Ming Yau; Rodolfo Ghirlando; Kent R Thurber; Robert Tycko
Journal:  J Am Chem Soc       Date:  2015-06-19       Impact factor: 15.419

6.  Observation of strongly forbidden solid effect dynamic nuclear polarization transitions via electron-electron double resonance detected NMR.

Authors:  Albert A Smith; Björn Corzilius; Olesya Haze; Timothy M Swager; Robert G Griffin
Journal:  J Chem Phys       Date:  2013-12-07       Impact factor: 3.488

7.  Ramped-amplitude NOVEL.

Authors:  T V Can; R T Weber; J J Walish; T M Swager; R G Griffin
Journal:  J Chem Phys       Date:  2017-04-21       Impact factor: 3.488

8.  Solvent-free dynamic nuclear polarization of amorphous and crystalline ortho-terphenyl.

Authors:  Ta-Chung Ong; Melody L Mak-Jurkauskas; Joseph J Walish; Vladimir K Michaelis; Björn Corzilius; Albert A Smith; Andrew M Clausen; Janet C Cheetham; Timothy M Swager; Robert G Griffin
Journal:  J Phys Chem B       Date:  2013-03-04       Impact factor: 2.991

9.  Cryogenic Sample Loading into a Magic Angle Spinning Nuclear Magnetic Resonance Spectrometer that Preserves Cellular Viability.

Authors:  Rupam Ghosh; Jaka Kragelj; Yiling Xiao; Kendra K Frederick
Journal:  J Vis Exp       Date:  2020-09-01       Impact factor: 1.355

10.  Intermolecular alignment in β2-microglobulin amyloid fibrils.

Authors:  Galia T Debelouchina; Geoffrey W Platt; Marvin J Bayro; Sheena E Radford; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2010-11-15       Impact factor: 15.419

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