Literature DB >> 27348158

Chemical probes for methyl lysine reader domains.

Lindsey I James1, Stephen V Frye2.   

Abstract

The primary intent of a chemical probe is to establish the relationship between a molecular target, usually a protein whose function is modulated by the probe, and the biological consequences of that modulation. In order to fulfill this purpose, a chemical probe must be profiled for selectivity, mechanism of action, and cellular activity, as the cell is the minimal system in which 'biology' can be explored. This review provides a brief overview of progress towards chemical probes for methyl lysine reader domains with a focus on recent progress targeting chromodomains.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27348158      PMCID: PMC5018434          DOI: 10.1016/j.cbpa.2016.06.004

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  42 in total

1.  The L3MBTL3 Methyl-Lysine Reader Domain Functions As a Dimer.

Authors:  Brandi M Baughman; Samantha G Pattenden; Jacqueline L Norris; Lindsey I James; Stephen V Frye
Journal:  ACS Chem Biol       Date:  2015-09-02       Impact factor: 5.100

Review 2.  Polycomb silencers control cell fate, development and cancer.

Authors:  Anke Sparmann; Maarten van Lohuizen
Journal:  Nat Rev Cancer       Date:  2006-11       Impact factor: 60.716

3.  Recognizing and exploiting differences between RNAi and small-molecule inhibitors.

Authors:  William A Weiss; Stephen S Taylor; Kevan M Shokat
Journal:  Nat Chem Biol       Date:  2007-12       Impact factor: 15.040

4.  Screening for inhibitors of low-affinity epigenetic peptide-protein interactions: an AlphaScreen-based assay for antagonists of methyl-lysine binding proteins.

Authors:  Tim J Wigle; J Martin Herold; Guillermo A Senisterra; Masoud Vedadi; Dmitri B Kireev; Cheryl H Arrowsmith; Stephen V Frye; William P Janzen
Journal:  J Biomol Screen       Date:  2009-12-11

5.  The cellular thermal shift assay for evaluating drug target interactions in cells.

Authors:  Rozbeh Jafari; Helena Almqvist; Hanna Axelsson; Marina Ignatushchenko; Thomas Lundbäck; Pär Nordlund; Daniel Martinez Molina
Journal:  Nat Protoc       Date:  2014-08-07       Impact factor: 13.491

6.  Selective Inhibition of CBX6: A Methyllysine Reader Protein in the Polycomb Family.

Authors:  Natalia Milosevich; Michael C Gignac; James McFarlane; Chakravarthi Simhadri; Shanti Horvath; Kevin D Daze; Caitlin S Croft; Aman Dheri; Taylor T H Quon; Sarah F Douglas; Jeremy E Wulff; Irina Paci; Fraser Hof
Journal:  ACS Med Chem Lett       Date:  2015-12-07       Impact factor: 4.345

7.  The structure-activity relationships of L3MBTL3 inhibitors: flexibility of the dimer interface.

Authors:  Michelle A Camerino; Nan Zhong; Aiping Dong; Bradley M Dickson; Lindsey I James; Brandi M Baughman; Jacqueline L Norris; Dmitri B Kireev; William P Janzen; Cheryl H Arrowsmith; Stephen V Frye
Journal:  Medchemcomm       Date:  2013-11       Impact factor: 3.597

8.  An orally bioavailable chemical probe of the Lysine Methyltransferases EZH2 and EZH1.

Authors:  Kyle D Konze; Anqi Ma; Fengling Li; Dalia Barsyte-Lovejoy; Trevor Parton; Christopher J Macnevin; Feng Liu; Cen Gao; Xi-Ping Huang; Ekaterina Kuznetsova; Marie Rougie; Alice Jiang; Samantha G Pattenden; Jacqueline L Norris; Lindsey I James; Bryan L Roth; Peter J Brown; Stephen V Frye; Cheryl H Arrowsmith; Klaus M Hahn; Gang Greg Wang; Masoud Vedadi; Jian Jin
Journal:  ACS Chem Biol       Date:  2013-04-24       Impact factor: 5.100

9.  Recognition and specificity determinants of the human cbx chromodomains.

Authors:  Lilia Kaustov; Hui Ouyang; Maria Amaya; Alexander Lemak; Nataliya Nady; Shili Duan; Gregory A Wasney; Zhihong Li; Masoud Vedadi; Matthieu Schapira; Jinrong Min; Cheryl H Arrowsmith
Journal:  J Biol Chem       Date:  2010-11-03       Impact factor: 5.157

10.  Chemical basis for the recognition of trimethyllysine by epigenetic reader proteins.

Authors:  Jos J A G Kamps; Jiaxin Huang; Jordi Poater; Chao Xu; Bas J G E Pieters; Aiping Dong; Jinrong Min; Woody Sherman; Thijs Beuming; F Matthias Bickelhaupt; Haitao Li; Jasmin Mecinović
Journal:  Nat Commun       Date:  2015-11-18       Impact factor: 14.919

View more
  9 in total

1.  Emerging Chemistry Strategies for Engineering Native Chromatin.

Authors:  Yael David; Tom W Muir
Journal:  J Am Chem Soc       Date:  2017-06-27       Impact factor: 15.419

2.  Target class drug discovery.

Authors:  Kimberly D Barnash; Lindsey I James; Stephen V Frye
Journal:  Nat Chem Biol       Date:  2017-09-19       Impact factor: 15.040

3.  Engineering Methyllysine Writers and Readers for Allele-Specific Regulation of Protein-Protein Interactions.

Authors:  Simran Arora; W Seth Horne; Kabirul Islam
Journal:  J Am Chem Soc       Date:  2019-09-20       Impact factor: 15.419

4.  A Peptidomimetic Ligand Targeting the Chromodomain of MPP8 Reveals HRP2's Association with the HUSH Complex.

Authors:  Jarod M Waybright; Sarah E Clinkscales; Kimberly D Barnash; Gabrielle R Budziszewski; Justin M Rectenwald; Anna M Chiarella; Jacqueline L Norris-Drouin; Stephanie H Cholensky; Kenneth H Pearce; Laura E Herring; Robert K McGinty; Nathaniel A Hathaway; Lindsey I James
Journal:  ACS Chem Biol       Date:  2021-08-20       Impact factor: 4.634

5.  Discovery and Mechanism of Small Molecule Inhibitors Selective for the Chromatin-Binding Domains of Oncogenic UHRF1.

Authors:  Wallace H Liu; Robert E Miner; Brittany N Albaugh; Gene E Ananiev; Scott A Wildman; John M Denu
Journal:  Biochemistry       Date:  2022-02-10       Impact factor: 3.321

6.  Investigation of Trimethyllysine Binding by the HP1 Chromodomain via Unnatural Amino Acid Mutagenesis.

Authors:  Stefanie A Baril; Amber L Koenig; Mackenzie W Krone; Katherine I Albanese; Cyndi Qixin He; Ga Young Lee; Kendall N Houk; Marcey L Waters; Eric M Brustad
Journal:  J Am Chem Soc       Date:  2017-11-20       Impact factor: 15.419

7.  Getting a handle on chemical probes of chomatin readers.

Authors:  Jarod M Waybright; Lindsey I James
Journal:  Future Med Chem       Date:  2020-01-10       Impact factor: 3.808

8.  Structure-Activity Relationships of Cbx7 Inhibitors, Including Selectivity Studies against Other Cbx Proteins.

Authors:  Chakravarthi Simhadri; Michael C Gignac; Cameron J Anderson; Natalia Milosevich; Aman Dheri; Nishant Prashar; Robert T Flemmer; Amarjot Dev; Trevor G Henderson; Sarah F Douglas; Jeremy E Wulff; Fraser Hof
Journal:  ACS Omega       Date:  2016-10-12

9.  Profiling and Validation of Live-Cell Protein Methylation with Engineered Enzymes and Methionine Analogues.

Authors:  Nicole Weiss; Chamara Seneviranthe; Ming Jiang; Ke Wang; Minkui Luo
Journal:  Curr Protoc       Date:  2021-08
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.