Literature DB >> 28635271

Emerging Chemistry Strategies for Engineering Native Chromatin.

Yael David1, Tom W Muir2.   

Abstract

Chromosomes present one of most challenging of all substrates for biochemical study. This is because genomic DNA is physically associated with an astonishing collection of nuclear factors, which serve to not only store the nucleic acid in a stable form, but also grant access to the information it encodes when needed. Understanding this complex molecular choreography is central to the field of epigenetics. One of the great challenges in this area is to move beyond correlative type information, which is now in abundant supply, to the point where we can truly connect the dots at the molecular level. Establishing such causal relationships requires precise manipulation of the covalent structure of chromatin. Tools for this purpose are currently in short supply, creating an opportunity that, as we will argue in this Perspective, is well suited to the sensibilities of the chemist.

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Year:  2017        PMID: 28635271      PMCID: PMC5752102          DOI: 10.1021/jacs.7b03430

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  75 in total

1.  Live-cell super-resolution imaging with trimethoprim conjugates.

Authors:  Richard Wombacher; Meike Heidbreder; Sebastian van de Linde; Michael P Sheetz; Mike Heilemann; Virginia W Cornish; Markus Sauer
Journal:  Nat Methods       Date:  2010-08-08       Impact factor: 28.547

2.  Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin.

Authors:  Matthew T Holt; Yael David; Sam Pollock; Zhanyun Tang; Jongcheol Jeon; Jaehoon Kim; Robert G Roeder; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

4.  Dynamics and memory of heterochromatin in living cells.

Authors:  Nathaniel A Hathaway; Oliver Bell; Courtney Hodges; Erik L Miller; Dana S Neel; Gerald R Crabtree
Journal:  Cell       Date:  2012-06-14       Impact factor: 41.582

5.  Biological applications of protein splicing.

Authors:  Miquel Vila-Perelló; Tom W Muir
Journal:  Cell       Date:  2010-10-15       Impact factor: 41.582

6.  Peptide microarrays to interrogate the "histone code".

Authors:  Scott B Rothbart; Krzysztof Krajewski; Brian D Strahl; Stephen M Fuchs
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

Review 7.  Dynamics and Context-Dependent Roles of DNA Methylation.

Authors:  Christina Ambrosi; Massimiliano Manzo; Tuncay Baubec
Journal:  J Mol Biol       Date:  2017-02-16       Impact factor: 5.469

Review 8.  Unnatural amino acid incorporation in E. coli: current and future applications in the design of therapeutic proteins.

Authors:  Kim Wals; Huib Ovaa
Journal:  Front Chem       Date:  2014-04-01       Impact factor: 5.221

9.  Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair.

Authors:  Susan M Hancock; Rajendra Uprety; Alexander Deiters; Jason W Chin
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

10.  Evidence that ubiquitylated H2B corrals hDot1L on the nucleosomal surface to induce H3K79 methylation.

Authors:  Linjiao Zhou; Matthew T Holt; Nami Ohashi; Aishan Zhao; Manuel M Müller; Boyuan Wang; Tom W Muir
Journal:  Nat Commun       Date:  2016-02-02       Impact factor: 14.919

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  12 in total

Review 1.  (De)Toxifying the Epigenetic Code.

Authors:  Qingfei Zheng; Nicholas A Prescott; Igor Maksimovic; Yael David
Journal:  Chem Res Toxicol       Date:  2019-03-18       Impact factor: 3.739

Review 2.  Chemoenzymatic Semisynthesis of Proteins.

Authors:  Robert E Thompson; Tom W Muir
Journal:  Chem Rev       Date:  2019-11-27       Impact factor: 60.622

3.  A simple and versatile system for the ATP-dependent assembly of chromatin.

Authors:  Mai T Khuong; Jia Fei; Grisel Cruz-Becerra; James T Kadonaga
Journal:  J Biol Chem       Date:  2017-10-05       Impact factor: 5.157

4.  Live-cell protein engineering with an ultra-short split intein.

Authors:  Antony J Burton; Michael Haugbro; Eva Parisi; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-18       Impact factor: 11.205

Review 5.  Proteomics of Long-Lived Mammals.

Authors:  Gregory Tombline; Jonathan Gigas; Nicholas Macoretta; Max Zacher; Stephan Emmrich; Yang Zhao; Andrei Seluanov; Vera Gorbunova
Journal:  Proteomics       Date:  2020-01-09       Impact factor: 3.984

6.  Removable Backbone Modification (RBM) Strategy for the Chemical Synthesis of Hydrophobic Peptides/Proteins.

Authors:  Dong-Liang Huang; Ying Li; Ji-Shen Zheng
Journal:  Methods Mol Biol       Date:  2022

7.  Terminal Uridylyl Transferase Mediated Site-Directed Access to Clickable Chromatin Employing CRISPR-dCas9.

Authors:  Jerrin Thomas George; Mohd Azhar; Meghali Aich; Dipanjali Sinha; Uddhav B Ambi; Souvik Maiti; Debojyoti Chakraborty; Seergazhi G Srivatsan
Journal:  J Am Chem Soc       Date:  2020-07-28       Impact factor: 15.419

Review 8.  Analytical epigenetics: single-molecule optical detection of DNA and histone modifications.

Authors:  Christian Heck; Yael Michaeli; Ilko Bald; Yuval Ebenstein
Journal:  Curr Opin Biotechnol       Date:  2018-10-13       Impact factor: 9.740

9.  Targeting Hepatitis B Virus Covalently Closed Circular DNA and Hepatitis B Virus X Protein: Recent Advances and New Approaches.

Authors:  Nicholas A Prescott; Yaron Bram; Robert E Schwartz; Yael David
Journal:  ACS Infect Dis       Date:  2019-09-27       Impact factor: 5.084

10.  Diverse protein manipulations with genetically encoded glutamic acid benzyl ester.

Authors:  Xiaochen Yang; Hui Miao; Ruotong Xiao; Luyao Wang; Yan Zhao; Qifan Wu; Yanli Ji; Juanjuan Du; Hongqiang Qin; Weimin Xuan
Journal:  Chem Sci       Date:  2021-06-17       Impact factor: 9.825

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