Literature DB >> 31920100

Getting a handle on chemical probes of chomatin readers.

Jarod M Waybright1,2, Lindsey I James1,2.   

Abstract

The dynamic nature of histone post-translational modifications such as methylation or acetylation makes possible the alteration of disease associated epigenetic states through the manipulation of the associated epigenetic machinery. One approach is through small molecule perturbation. Chemical probes of epigenetic reader domains have been critical in improving our understanding of the biological consequences of modulating their targets, while also enabling the development of novel probe-based reagents. By appending a functional handle to a reader domain probe, a chemical toolbox of reagents can be created to facilitate chemiprecipitation of epigenetic complexes, evaluate probe selectivity, develop in vitro screening assays, visualize cellular target localization, enable target degradation and recruit epigenetic machinery to a site within the genome in a highly controlled fashion.

Entities:  

Keywords:  biotin; bivalent ligand; chemical probe; chemical tool; chromatin reader; epigenetics

Mesh:

Substances:

Year:  2020        PMID: 31920100      PMCID: PMC8025116          DOI: 10.4155/fmc-2019-0274

Source DB:  PubMed          Journal:  Future Med Chem        ISSN: 1756-8919            Impact factor:   3.808


  87 in total

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Authors:  Cheryl H Arrowsmith; Chas Bountra; Paul V Fish; Kevin Lee; Matthieu Schapira
Journal:  Nat Rev Drug Discov       Date:  2012-04-13       Impact factor: 84.694

Review 2.  Chemical Inhibitors of Epigenetic Methyllysine Reader Proteins.

Authors:  Natalia Milosevich; Fraser Hof
Journal:  Biochemistry       Date:  2015-12-28       Impact factor: 3.162

Review 3.  Targeted protein degradation by PROTACs.

Authors:  Taavi K Neklesa; James D Winkler; Craig M Crews
Journal:  Pharmacol Ther       Date:  2017-02-14       Impact factor: 12.310

Review 4.  Chemoproteomics and Chemical Probes for Target Discovery.

Authors:  Gerard Drewes; Stefan Knapp
Journal:  Trends Biotechnol       Date:  2018-07-13       Impact factor: 19.536

5.  Synthetic genome readers target clustered binding sites across diverse chromatin states.

Authors:  Graham S Erwin; Matthew P Grieshop; Devesh Bhimsaria; Truman J Do; José A Rodríguez-Martínez; Charu Mehta; Kanika Khanna; Scott A Swanson; Ron Stewart; James A Thomson; Parameswaran Ramanathan; Aseem Z Ansari
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-08       Impact factor: 11.205

6.  Fluorescence-based methods for screening writers and readers of histone methyl marks.

Authors:  Abdellah Allali-Hassani; Gregory A Wasney; Alena Siarheyeva; Taraneh Hajian; Cheryl H Arrowsmith; Masoud Vedadi
Journal:  J Biomol Screen       Date:  2011-10-04

7.  Selective Small Molecule Induced Degradation of the BET Bromodomain Protein BRD4.

Authors:  Michael Zengerle; Kwok-Ho Chan; Alessio Ciulli
Journal:  ACS Chem Biol       Date:  2015-06-16       Impact factor: 5.100

8.  Integration and exchange of split dCas9 domains for transcriptional controls in mammalian cells.

Authors:  Dacheng Ma; Shuguang Peng; Zhen Xie
Journal:  Nat Commun       Date:  2016-10-03       Impact factor: 14.919

9.  A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1.

Authors:  Jacob I Stuckey; Bradley M Dickson; Nancy Cheng; Yanli Liu; Jacqueline L Norris; Stephanie H Cholensky; Wolfram Tempel; Su Qin; Katherine G Huber; Cari Sagum; Karynne Black; Fengling Li; Xi-Ping Huang; Bryan L Roth; Brandi M Baughman; Guillermo Senisterra; Samantha G Pattenden; Masoud Vedadi; Peter J Brown; Mark T Bedford; Jinrong Min; Cheryl H Arrowsmith; Lindsey I James; Stephen V Frye
Journal:  Nat Chem Biol       Date:  2016-01-25       Impact factor: 15.040

Review 10.  BET inhibitors as novel therapeutic agents in breast cancer.

Authors:  Alberto Ocaña; Cristina Nieto-Jiménez; Atanasio Pandiella
Journal:  Oncotarget       Date:  2017-08-01
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  2 in total

1.  A Peptidomimetic Ligand Targeting the Chromodomain of MPP8 Reveals HRP2's Association with the HUSH Complex.

Authors:  Jarod M Waybright; Sarah E Clinkscales; Kimberly D Barnash; Gabrielle R Budziszewski; Justin M Rectenwald; Anna M Chiarella; Jacqueline L Norris-Drouin; Stephanie H Cholensky; Kenneth H Pearce; Laura E Herring; Robert K McGinty; Nathaniel A Hathaway; Lindsey I James
Journal:  ACS Chem Biol       Date:  2021-08-20       Impact factor: 4.634

2.  Cdyl Deficiency Brakes Neuronal Excitability and Nociception through Promoting Kcnb1 Transcription in Peripheral Sensory Neurons.

Authors:  Zhao-Wei Sun; Jarod M Waybright; Serap Beldar; Lu Chen; Caroline A Foley; Jacqueline L Norris-Drouin; Tian-Jie Lyu; Aiping Dong; Jinrong Min; Yu-Pu Wang; Lindsey I James; Yun Wang
Journal:  Adv Sci (Weinh)       Date:  2022-02-04       Impact factor: 16.806

  2 in total

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