Literature DB >> 27283515

The APOBEC Protein Family: United by Structure, Divergent in Function.

Jason D Salter1, Ryan P Bennett1, Harold C Smith2.   

Abstract

The APOBEC (apolipoprotein B mRNA editing catalytic polypeptide-like) family of proteins have diverse and important functions in human health and disease. These proteins have an intrinsic ability to bind to both RNA and single-stranded (ss) DNA. Both function and tissue-specific expression varies widely for each APOBEC protein. We are beginning to understand that the activity of APOBEC proteins is regulated through genetic alterations, changes in their transcription and mRNA processing, and through their interactions with other macromolecules in the cell. Loss of cellular control of APOBEC activities leads to DNA hypermutation and promiscuous RNA editing associated with the development of cancer or viral drug resistance, underscoring the importance of understanding how APOBEC proteins are regulated.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  APOBEC; DNA mutation; RNA editing; cytidine deaminase; disease mechanisms; epigenetics

Mesh:

Substances:

Year:  2016        PMID: 27283515      PMCID: PMC4930407          DOI: 10.1016/j.tibs.2016.05.001

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  141 in total

1.  An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22.

Authors:  Adam Jarmuz; Ann Chester; Jayne Bayliss; Jane Gisbourne; Ian Dunham; James Scott; Naveenan Navaratnam
Journal:  Genomics       Date:  2002-03       Impact factor: 5.736

Review 2.  The generation of antibody diversity through somatic hypermutation and class switch recombination.

Authors:  Ziqiang Li; Caroline J Woo; Maria D Iglesias-Ussel; Diana Ronai; Matthew D Scharff
Journal:  Genes Dev       Date:  2004-01-01       Impact factor: 11.361

3.  APOBEC3H polymorphisms associated with the susceptibility to HIV-1 infection and AIDS progression in Japanese.

Authors:  Daisuke Sakurai; Yasumasa Iwatani; Hitoshi Ohtani; Taeko K Naruse; Hiroshi Terunuma; Wataru Sugiura; Akinori Kimura
Journal:  Immunogenetics       Date:  2015-02-27       Impact factor: 2.846

4.  The APOBEC3C crystal structure and the interface for HIV-1 Vif binding.

Authors:  Shingo Kitamura; Hirotaka Ode; Masaaki Nakashima; Mayumi Imahashi; Yuriko Naganawa; Teppei Kurosawa; Yoshiyuki Yokomaku; Takashi Yamane; Nobuhisa Watanabe; Atsuo Suzuki; Wataru Sugiura; Yasumasa Iwatani
Journal:  Nat Struct Mol Biol       Date:  2012-09-23       Impact factor: 15.369

5.  APOBEC3G: a double agent in defense.

Authors:  Harold C Smith
Journal:  Trends Biochem Sci       Date:  2011-01-14       Impact factor: 13.807

6.  Innate immune signaling induces high levels of TC-specific deaminase activity in primary monocyte-derived cells through expression of APOBEC3A isoforms.

Authors:  Beth K Thielen; John P McNevin; M Juliana McElrath; Brook Vander Stoep Hunt; Kevin C Klein; Jaisri R Lingappa
Journal:  J Biol Chem       Date:  2010-07-08       Impact factor: 5.157

7.  A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3'UTR enhances chromosomal DNA damage.

Authors:  Vincent Caval; Rodolphe Suspène; Milana Shapira; Jean-Pierre Vartanian; Simon Wain-Hobson
Journal:  Nat Commun       Date:  2014-10-09       Impact factor: 14.919

8.  Crystal structure of the DNA cytosine deaminase APOBEC3F: the catalytically active and HIV-1 Vif-binding domain.

Authors:  Markus-Frederik Bohn; Shivender M D Shandilya; John S Albin; Takahide Kouno; Brett D Anderson; Rebecca M McDougle; Michael A Carpenter; Anurag Rathore; Leah Evans; Ahkillah N Davis; Jingying Zhang; Yongjian Lu; Mohan Somasundaran; Hiroshi Matsuo; Reuben S Harris; Celia A Schiffer
Journal:  Structure       Date:  2013-05-16       Impact factor: 5.006

9.  Human papillomavirus E6 triggers upregulation of the antiviral and cancer genomic DNA deaminase APOBEC3B.

Authors:  Valdimara C Vieira; Brandon Leonard; Elizabeth A White; Gabriel J Starrett; Nuri A Temiz; Laurel D Lorenz; Denis Lee; Marcelo A Soares; Paul F Lambert; Peter M Howley; Reuben S Harris
Journal:  mBio       Date:  2014-12-23       Impact factor: 7.867

10.  RNA-dependent oligomerization of APOBEC3G is required for restriction of HIV-1.

Authors:  Hendrik Huthoff; Flavia Autore; Sarah Gallois-Montbrun; Franca Fraternali; Michael H Malim
Journal:  PLoS Pathog       Date:  2009-03-06       Impact factor: 6.823

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  135 in total

1.  Pan-cancer transcriptomic analysis dissects immune and proliferative functions of APOBEC3 cytidine deaminases.

Authors:  Joseph C F Ng; Jelmar Quist; Anita Grigoriadis; Michael H Malim; Franca Fraternali
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

Review 2.  Can modulators of apolipoproteinB biogenesis serve as an alternate target for cholesterol-lowering drugs?

Authors:  Lynley M Doonan; Edward A Fisher; Jeffrey L Brodsky
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2018-04-06       Impact factor: 4.698

Review 3.  RNA contributions to the form and function of biomolecular condensates.

Authors:  Christine Roden; Amy S Gladfelter
Journal:  Nat Rev Mol Cell Biol       Date:  2020-07-06       Impact factor: 94.444

4.  Mechanisms for targeted, purposeful mutation revealed in an APOBEC-DNA complex.

Authors:  Emily K Schutsky; Zachary M Hostetler; Rahul M Kohli
Journal:  Nat Struct Mol Biol       Date:  2017-02-06       Impact factor: 15.369

5.  In vivo base editing restores sensory transduction and transiently improves auditory function in a mouse model of recessive deafness.

Authors:  Wei-Hsi Yeh; Olga Shubina-Oleinik; Jonathan M Levy; Bifeng Pan; Gregory A Newby; Michael Wornow; Rachel Burt; Jonathan C Chen; Jeffrey R Holt; David R Liu
Journal:  Sci Transl Med       Date:  2020-06-03       Impact factor: 17.956

Review 6.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

7.  An Alu Element Insertion in Intron 1 Results in Aberrant Alternative Splicing of APOBEC3G Pre-mRNA in Northern Pig-Tailed Macaques (Macaca leonina) That May Reduce APOBEC3G-Mediated Hypermutation Pressure on HIV-1.

Authors:  Xiao-Liang Zhang; Meng-Ting Luo; Jia-Hao Song; Wei Pang; Yong-Tang Zheng
Journal:  J Virol       Date:  2020-01-31       Impact factor: 5.103

8.  A cytosine deaminase for programmable single-base RNA editing.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Brian Franklin; Jeremy Koob; Max J Kellner; Alim Ladha; Julia Joung; Paul Kirchgatterer; David B T Cox; Feng Zhang
Journal:  Science       Date:  2019-07-11       Impact factor: 47.728

Review 9.  Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases.

Authors:  Elisa Orecchini; Loredana Frassinelli; Silvia Galardi; Silvia Anna Ciafrè; Alessandro Michienzi
Journal:  Chromosome Res       Date:  2018-02-02       Impact factor: 5.239

Review 10.  Unveiling Human Non-Random Genome Editing Mechanisms Activated in Response to Chronic Environmental Changes: I. Where Might These Mechanisms Come from and What Might They Have Led To?

Authors:  Loris Zamai
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

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