Literature DB >> 27210763

IGF2BP3 Modulates the Interaction of Invasion-Associated Transcripts with RISC.

Hanane Ennajdaoui1, Jonathan M Howard2, Timothy Sterne-Weiler1, Fereshteh Jahanbani3, Doyle J Coyne2, Philip J Uren4, Marija Dargyte2, Sol Katzman5, Jolene M Draper2, Andrew Wallace2, Oscar Cazarez2, Suzanne C Burns6, Mei Qiao6, Lindsay Hinck2, Andrew D Smith4, Masoud M Toloue7, Benjamin J Blencowe8, Luiz O F Penalva6, Jeremy R Sanford9.   

Abstract

Insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) expression correlates with malignancy, but its role(s) in pathogenesis remains enigmatic. We interrogated the IGF2BP3-RNA interaction network in pancreatic ductal adenocarcinoma (PDAC) cells. Using a combination of genome-wide approaches, we have identified 164 direct mRNA targets of IGF2BP3. These transcripts encode proteins enriched for functions such as cell migration, proliferation, and adhesion. Loss of IGF2BP3 reduced PDAC cell invasiveness and remodeled focal adhesion junctions. Individual nucleotide resolution crosslinking immunoprecipitation (iCLIP) revealed significant overlap of IGF2BP3 and microRNA (miRNA) binding sites. IGF2BP3 promotes association of the RNA-induced silencing complex (RISC) with specific transcripts. Our results show that IGF2BP3 influences a malignancy-associated RNA regulon by modulating miRNA-mRNA interactions.
Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27210763      PMCID: PMC4889463          DOI: 10.1016/j.celrep.2016.04.083

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  44 in total

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2.  A family of insulin-like growth factor II mRNA-binding proteins represses translation in late development.

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Journal:  Mol Cell Biol       Date:  1999-02       Impact factor: 4.272

Review 3.  Competition between target sites of regulators shapes post-transcriptional gene regulation.

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4.  Site identification in high-throughput RNA-protein interaction data.

Authors:  Philip J Uren; Emad Bahrami-Samani; Suzanne C Burns; Mei Qiao; Fedor V Karginov; Emily Hodges; Gregory J Hannon; Jeremy R Sanford; Luiz O F Penalva; Andrew D Smith
Journal:  Bioinformatics       Date:  2012-09-28       Impact factor: 6.937

5.  Regulation of local expression of cell adhesion and motility-related mRNAs in breast cancer cells by IMP1/ZBP1.

Authors:  Wei Gu; Zachary Katz; Bin Wu; Hye Yoon Park; Deling Li; Stanley Lin; Amber L Wells; Robert H Singer
Journal:  J Cell Sci       Date:  2012-01-20       Impact factor: 5.285

6.  Repression of VEGFA by CA-rich element-binding microRNAs is modulated by hnRNP L.

Authors:  Faegheh Jafarifar; Peng Yao; Sandeepa M Eswarappa; Paul L Fox
Journal:  EMBO J       Date:  2011-02-22       Impact factor: 11.598

7.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:  Mark B Gerstein; Zhi John Lu; Eric L Van Nostrand; Chao Cheng; Bradley I Arshinoff; Tao Liu; Kevin Y Yip; Rebecca Robilotto; Andreas Rechtsteiner; Kohta Ikegami; Pedro Alves; Aurelien Chateigner; Marc Perry; Mitzi Morris; Raymond K Auerbach; Xin Feng; Jing Leng; Anne Vielle; Wei Niu; Kahn Rhrissorrakrai; Ashish Agarwal; Roger P Alexander; Galt Barber; Cathleen M Brdlik; Jennifer Brennan; Jeremy Jean Brouillet; Adrian Carr; Ming-Sin Cheung; Hiram Clawson; Sergio Contrino; Luke O Dannenberg; Abby F Dernburg; Arshad Desai; Lindsay Dick; Andréa C Dosé; Jiang Du; Thea Egelhofer; Sevinc Ercan; Ghia Euskirchen; Brent Ewing; Elise A Feingold; Reto Gassmann; Peter J Good; Phil Green; Francois Gullier; Michelle Gutwein; Mark S Guyer; Lukas Habegger; Ting Han; Jorja G Henikoff; Stefan R Henz; Angie Hinrichs; Heather Holster; Tony Hyman; A Leo Iniguez; Judith Janette; Morten Jensen; Masaomi Kato; W James Kent; Ellen Kephart; Vishal Khivansara; Ekta Khurana; John K Kim; Paulina Kolasinska-Zwierz; Eric C Lai; Isabel Latorre; Amber Leahey; Suzanna Lewis; Paul Lloyd; Lucas Lochovsky; Rebecca F Lowdon; Yaniv Lubling; Rachel Lyne; Michael MacCoss; Sebastian D Mackowiak; Marco Mangone; Sheldon McKay; Desirea Mecenas; Gennifer Merrihew; David M Miller; Andrew Muroyama; John I Murray; Siew-Loon Ooi; Hoang Pham; Taryn Phippen; Elicia A Preston; Nikolaus Rajewsky; Gunnar Rätsch; Heidi Rosenbaum; Joel Rozowsky; Kim Rutherford; Peter Ruzanov; Mihail Sarov; Rajkumar Sasidharan; Andrea Sboner; Paul Scheid; Eran Segal; Hyunjin Shin; Chong Shou; Frank J Slack; Cindie Slightam; Richard Smith; William C Spencer; E O Stinson; Scott Taing; Teruaki Takasaki; Dionne Vafeados; Ksenia Voronina; Guilin Wang; Nicole L Washington; Christina M Whittle; Beijing Wu; Koon-Kiu Yan; Georg Zeller; Zheng Zha; Mei Zhong; Xingliang Zhou; Julie Ahringer; Susan Strome; Kristin C Gunsalus; Gos Micklem; X Shirley Liu; Valerie Reinke; Stuart K Kim; LaDeana W Hillier; Steven Henikoff; Fabio Piano; Michael Snyder; Lincoln Stein; Jason D Lieb; Robert H Waterston
Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

8.  Active stabilization of human endothelial nitric oxide synthase mRNA by hnRNP E1 protects against antisense RNA and microRNAs.

Authors:  J J David Ho; G Brett Robb; Sharon C Tai; Paul J Turgeon; Imtiaz A Mawji; H S Jeffrey Man; Philip A Marsden
Journal:  Mol Cell Biol       Date:  2013-03-11       Impact factor: 4.272

9.  IMP3 RNP safe houses prevent miRNA-directed HMGA2 mRNA decay in cancer and development.

Authors:  Lars Jønson; Jan Christiansen; Thomas V O Hansen; Jonas Vikeså; Yohei Yamamoto; Finn C Nielsen
Journal:  Cell Rep       Date:  2014-04-03       Impact factor: 9.423

10.  The RNA-binding protein CUGBP1 regulates stability of tumor necrosis factor mRNA in muscle cells: implications for myotonic dystrophy.

Authors:  Libin Zhang; Jerome E Lee; Jeffrey Wilusz; Carol J Wilusz
Journal:  J Biol Chem       Date:  2008-06-16       Impact factor: 5.157

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  36 in total

Review 1.  Re-evaluating Strategies to Define the Immunoregulatory Roles of miRNAs.

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Journal:  Trends Immunol       Date:  2017-06-27       Impact factor: 16.687

Review 2.  RNA regulons in cancer and inflammation.

Authors:  Laura Simone Bisogno; Jack Donald Keene
Journal:  Curr Opin Genet Dev       Date:  2017-11-22       Impact factor: 5.578

3.  IGF2 mRNA binding protein 3 (IMP3) mediated regulation of transcriptome and translatome in glioma cells.

Authors:  Shruti Bhargava; Vikas Patil; Riyaz Ahmad Shah; Kumaravel Somasundaram
Journal:  Cancer Biol Ther       Date:  2017-12-19       Impact factor: 4.742

4.  Epigenetic Silencing of CDR1as Drives IGF2BP3-Mediated Melanoma Invasion and Metastasis.

Authors:  Douglas Hanniford; Alejandro Ulloa-Morales; Alcida Karz; Maria Gabriela Berzoti-Coelho; Rana S Moubarak; Beatriz Sánchez-Sendra; Andreas Kloetgen; Veronica Davalos; Jochen Imig; Pamela Wu; Varshini Vasudevaraja; Diana Argibay; Karin Lilja; Tommaso Tabaglio; Carlos Monteagudo; Ernesto Guccione; Aristotelis Tsirigos; Iman Osman; Iannis Aifantis; Eva Hernando
Journal:  Cancer Cell       Date:  2020-01-13       Impact factor: 31.743

5.  DO-RIP-seq to quantify RNA binding sites transcriptome-wide.

Authors:  Cindo O Nicholson; Matthew B Friedersdorf; Laura S Bisogno; Jack D Keene
Journal:  Methods       Date:  2016-11-10       Impact factor: 3.608

6.  The expression of m6A regulators correlated with the immune microenvironment plays an important role in the prognosis of pancreatic ductal adenocarcinoma.

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Journal:  Gland Surg       Date:  2022-01

Review 7.  Emerging Contributions of Cancer/Testis Antigens to Neoplastic Behaviors.

Authors:  Zane A Gibbs; Angelique W Whitehurst
Journal:  Trends Cancer       Date:  2018-09-20

8.  CircURI1 interacts with hnRNPM to inhibit metastasis by modulating alternative splicing in gastric cancer.

Authors:  Xiaolin Wang; Jingxin Li; Xing Bian; Cheng Wu; Jinghan Hua; Shuhui Chang; Tianyi Yu; Hong Li; Yongxiang Li; Shanshan Hu; Ge Shan; Wenchu Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-17       Impact factor: 11.205

9.  Identification of novel hub genes and lncRNAs related to the prognosis and progression of pancreatic cancer by microarray and integrated bioinformatics analysis.

Authors:  Xing Liang; Junfeng Peng; Danlei Chen; Liang Tang; Anan Liu; Zhiping Fu; Ligang Shi; Keqi Wang; Chenghao Shao
Journal:  Gland Surg       Date:  2021-03

10.  FOXO1 controls protein synthesis and transcript abundance of mutant polyglutamine proteins, preventing protein aggregation.

Authors:  Gabriel Vasata Furtado; Jing Yang; Di Wu; Christos I Papagiannopoulos; Hanna M Terpstra; E F Elsiena Kuiper; Sybille Krauss; Wei-Guo Zhu; Harm H Kampinga; Steven Bergink
Journal:  Hum Mol Genet       Date:  2021-05-31       Impact factor: 6.150

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