Literature DB >> 25488579

Competition between target sites of regulators shapes post-transcriptional gene regulation.

Marvin Jens1, Nikolaus Rajewsky1.   

Abstract

Post-transcriptional gene regulation (PTGR) of mRNA turnover, localization and translation is mediated by microRNAs (miRNAs) and RNA-binding proteins (RBPs). These regulators exert their effects by binding to specific sequences within their target mRNAs. Increasing evidence suggests that competition for binding is a fundamental principle of PTGR. Not only can miRNAs be sequestered and neutralized by the targets with which they interact through a process termed 'sponging', but competition between binding sites on different RNAs may also lead to regulatory crosstalk between transcripts. Here, we quantitatively model competition effects under physiological conditions and review the role of endogenous sponges for PTGR in light of the key features that emerge.

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Year:  2014        PMID: 25488579     DOI: 10.1038/nrg3853

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  119 in total

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Journal:  Nat Genet       Date:  2005-04-03       Impact factor: 38.330

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3.  Regulation of maternal Wnt mRNA translation in C. elegans embryos.

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Journal:  Development       Date:  2013-10-16       Impact factor: 6.868

4.  MicroRNAs and the Operon paper.

Authors:  Nikolaus Rajewsky
Journal:  J Mol Biol       Date:  2011-03-21       Impact factor: 5.469

5.  Competitive endogenous RNAs cannot alter microRNA function in vivo.

Authors:  Jennifer A Broderick; Phillip D Zamore
Journal:  Mol Cell       Date:  2014-06-05       Impact factor: 17.970

6.  A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility.

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Journal:  Nat Cell Biol       Date:  2010-09-05       Impact factor: 28.824

7.  Target mRNA abundance dilutes microRNA and siRNA activity.

Authors:  Aaron Arvey; Erik Larsson; Chris Sander; Christina S Leslie; Debora S Marks
Journal:  Mol Syst Biol       Date:  2010-04-20       Impact factor: 11.429

8.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

9.  Neuron-type specific regulation of a 3'UTR through redundant and combinatorially acting cis-regulatory elements.

Authors:  Dominic Didiano; Luisa Cochella; Baris Tursun; Oliver Hobert
Journal:  RNA       Date:  2009-12-29       Impact factor: 4.942

10.  Nanophotonic trapping for precise manipulation of biomolecular arrays.

Authors:  Mohammad Soltani; Jun Lin; Robert A Forties; James T Inman; Summer N Saraf; Robert M Fulbright; Michal Lipson; Michelle D Wang
Journal:  Nat Nanotechnol       Date:  2014-04-28       Impact factor: 39.213

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  123 in total

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4.  Modelling and measuring intracellular competition for finite resources during gene expression.

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5.  Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer.

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Review 6.  Mechanistic Insights into MicroRNA-Mediated Gene Silencing.

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Review 7.  Long noncoding RNAs in lipid metabolism.

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Review 8.  Long non-coding RNAs regulating macrophage functions in homeostasis and disease.

Authors:  Kaitlyn R Scacalossi; Coen van Solingen; Kathryn J Moore
Journal:  Vascul Pharmacol       Date:  2018-03-13       Impact factor: 5.773

9.  Exosomal lncRNAs as new players in cell-to-cell communication.

Authors:  Mihnea Dragomir; Baoqing Chen; George A Calin
Journal:  Transl Cancer Res       Date:  2018-03       Impact factor: 1.241

Review 10.  AUF1 regulation of coding and noncoding RNA.

Authors:  Elizabeth J F White; Aerielle E Matsangos; Gerald M Wilson
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-09-13       Impact factor: 9.957

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