Literature DB >> 29175729

RNA regulons in cancer and inflammation.

Laura Simone Bisogno1, Jack Donald Keene2.   

Abstract

Gene expression is the fundamental driving force that coordinates normal cellular processes and adapts to dysfunctional conditions such as oncogenic development and progression. While transcription is the basal process of gene expression, RNA transcripts are both the templates that encode proteins as well as perform functions that directly regulate diverse cellular processes. All levels of gene expression require coordination to optimize available resources, but how global gene expression drives cancers or responds to disrupting oncogenic mutations is not understood. Post-transcriptional coordination is controlled by RNA regulons that are governed by RNA-binding proteins (RBPs) and noncoding RNAs (ncRNAs) that bind and regulate multiple overlapping groups of functionally related RNAs. RNA regulons have been demonstrated to affect many biological functions and diseases, and many examples are known to regulate protein production in cancer and immune cells. In this review, we discuss RNA regulons demonstrated to coordinate global post-transcriptional mechanisms in carcinogenesis and inflammation.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29175729      PMCID: PMC6489128          DOI: 10.1016/j.gde.2017.11.004

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  64 in total

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Authors:  Barsanjit Mazumder; Prabha Sampath; Paul L Fox
Journal:  Biol Res       Date:  2006       Impact factor: 5.612

Review 2.  Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover.

Authors:  P J Blackshear
Journal:  Biochem Soc Trans       Date:  2002-11       Impact factor: 5.407

3.  HuR as a negative posttranscriptional modulator in inflammation.

Authors:  Vicky Katsanou; Olympia Papadaki; Stavros Milatos; Perry J Blackshear; Paul Anderson; George Kollias; Dimitris L Kontoyiannis
Journal:  Mol Cell       Date:  2005-09-16       Impact factor: 17.970

Review 4.  Macromolecular complexes as depots for releasable regulatory proteins.

Authors:  Partho Sarothi Ray; Abul Arif; Paul L Fox
Journal:  Trends Biochem Sci       Date:  2007-02-23       Impact factor: 13.807

5.  Altered expression of the mRNA stability factor HuR promotes cyclooxygenase-2 expression in colon cancer cells.

Authors:  D A Dixon; N D Tolley; P H King; L B Nabors; T M McIntyre; G A Zimmerman; S M Prescott
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6.  Recruitment and activation of mRNA decay enzymes by two ARE-mediated decay activation domains in the proteins TTP and BRF-1.

Authors:  Jens Lykke-Andersen; Eileen Wagner
Journal:  Genes Dev       Date:  2005-02-01       Impact factor: 11.361

7.  Unr, a cytoplasmic RNA-binding protein with cold-shock domains, is involved in control of apoptosis in ES and HuH7 cells.

Authors:  V Dormoy-Raclet; J Markovits; Y Malato; S Huet; P Lagarde; D Montaudon; A Jacquemin-Sablon; H Jacquemin-Sablon
Journal:  Oncogene       Date:  2006-11-06       Impact factor: 9.867

Review 8.  A cytokine-mediated link between innate immunity, inflammation, and cancer.

Authors:  Wan-Wan Lin; Michael Karin
Journal:  J Clin Invest       Date:  2007-05       Impact factor: 14.808

9.  Noncanonical function of glutamyl-prolyl-tRNA synthetase: gene-specific silencing of translation.

Authors:  Prabha Sampath; Barsanjit Mazumder; Vasudevan Seshadri; Carri A Gerber; Laurent Chavatte; Michael Kinter; Shu M Ting; J David Dignam; Sunghoon Kim; Donna M Driscoll; Paul L Fox
Journal:  Cell       Date:  2004-10-15       Impact factor: 41.582

10.  A post-transcriptional pathway represses monocyte VEGF-A expression and angiogenic activity.

Authors:  Partho Sarothi Ray; Paul L Fox
Journal:  EMBO J       Date:  2007-07-05       Impact factor: 11.598

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  20 in total

1.  Translational offsetting as a mode of estrogen receptor α-dependent regulation of gene expression.

Authors:  Julie Lorent; Eric P Kusnadi; Vincent van Hoef; Richard J Rebello; Matthew Leibovitch; Johannes Ristau; Shan Chen; Mitchell G Lawrence; Krzysztof J Szkop; Baila Samreen; Preetika Balanathan; Francesca Rapino; Pierre Close; Patricia Bukczynska; Karin Scharmann; Itsuhiro Takizawa; Gail P Risbridger; Luke A Selth; Sebastian A Leidel; Qishan Lin; Ivan Topisirovic; Ola Larsson; Luc Furic
Journal:  EMBO J       Date:  2019-09-26       Impact factor: 11.598

2.  Role of the RNA-binding protein La in cancer pathobiology.

Authors:  Gunhild Sommer; Tilman Heise
Journal:  RNA Biol       Date:  2020-07-20       Impact factor: 4.652

3.  Targeting AU-rich element-mediated mRNA decay with a truncated active form of the zinc-finger protein TIS11b/BRF1 impairs major hallmarks of mammary tumorigenesis.

Authors:  Felicitas Rataj; Séverine Planel; Josiane Denis; Caroline Roelants; Odile Filhol; Laurent Guyon; Jean-Jacques Feige; Nadia Cherradi
Journal:  Oncogene       Date:  2019-03-26       Impact factor: 9.867

4.  A novel RNA binding protein-associated prognostic model to predict overall survival in hepatocellular carcinoma patients.

Authors:  Ye Liu; Xiaohong Liu; Yang Gu; Haofeng Lu
Journal:  Medicine (Baltimore)       Date:  2021-07-23       Impact factor: 1.817

5.  Differential translational control of 5' IRE-containing mRNA in response to dietary iron deficiency and acute iron overload.

Authors:  Kerry R Garza; Stephen L Clarke; Yi-Hsuan Ho; Matthew D Bruss; Aparna Vasanthakumar; Sheila A Anderson; Richard S Eisenstein
Journal:  Metallomics       Date:  2020-12-23       Impact factor: 4.526

Review 6.  MHC Class III RNA Binding Proteins and Immunity.

Authors:  Geraldine Schott; Mariano A Garcia-Blanco
Journal:  RNA Biol       Date:  2020-12-20       Impact factor: 4.652

Review 7.  Uncovering the Role of RNA-Binding Proteins in Gene Expression in the Immune System.

Authors:  Manuel D Díaz-Muñoz; Martin Turner
Journal:  Front Immunol       Date:  2018-05-23       Impact factor: 7.561

8.  HuR/ELAVL1 drives malignant peripheral nerve sheath tumor growth and metastasis.

Authors:  Marta Palomo-Irigoyen; Encarni Pérez-Andrés; Marta Iruarrizaga-Lejarreta; Adrián Barreira-Manrique; Miguel Tamayo-Caro; Laura Vila-Vecilla; Leire Moreno-Cugnon; Nagore Beitia; Daniela Medrano; David Fernández-Ramos; Juan José Lozano; Satoshi Okawa; José L Lavín; Natalia Martín-Martín; James D Sutherland; Virginia Guitiérez de Juan; Monika Gonzalez-Lopez; Nuria Macías-Cámara; David Mosén-Ansorena; Liyam Laraba; C Oliver Hanemann; Emanuela Ercolano; David B Parkinson; Christopher W Schultz; Marcos J Araúzo-Bravo; Alex M Ascensión; Daniela Gerovska; Haizea Iribar; Ander Izeta; Peter Pytel; Philipp Krastel; Alessandro Provenzani; Pierfausto Seneci; Ruben D Carrasco; Antonio Del Sol; María Luz Martinez-Chantar; Rosa Barrio; Eduard Serra; Conxi Lazaro; Adrienne M Flanagan; Myriam Gorospe; Nancy Ratner; Ana M Aransay; Arkaitz Carracedo; Marta Varela-Rey; Ashwin Woodhoo
Journal:  J Clin Invest       Date:  2020-07-01       Impact factor: 14.808

Review 9.  Roles of Tristetraprolin in Tumorigenesis.

Authors:  Jeong-Min Park; Tae-Hee Lee; Tae-Hong Kang
Journal:  Int J Mol Sci       Date:  2018-10-29       Impact factor: 5.923

10.  Cooperative translational control of polymorphic BAFF by NF90 and miR-15a.

Authors:  M Laura Idda; Valeria Lodde; Waverly G McClusky; Jennifer L Martindale; Xiaoling Yang; Rachel Munk; Maristella Steri; Valeria Orrù; Antonella Mulas; Francesco Cucca; Kotb Abdelmohsen; Myriam Gorospe
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

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