Literature DB >> 26895423

RNA Processing and Genome Stability: Cause and Consequence.

Vihandha O Wickramasinghe1, Ashok R Venkitaraman2.   

Abstract

It is emerging that the pathways that process newly transcribed RNA molecules also regulate the response to DNA damage at multiple levels. Here, we discuss recent insights into how RNA processing pathways participate in DNA damage recognition, signaling, and repair, selectively influence the expression of genome-stabilizing proteins, and resolve deleterious DNA/RNA hybrids (R-loops) formed during transcription and RNA processing. The importance of these pathways for the DNA damage response (DDR) is underscored by the growing appreciation that defects in these regulatory connections may be connected to the genome instability involved in several human diseases, including cancer.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 26895423      PMCID: PMC5905668          DOI: 10.1016/j.molcel.2016.02.001

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  100 in total

1.  The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression.

Authors:  F E Kleiman; J L Manley
Journal:  Cell       Date:  2001-03-09       Impact factor: 41.582

2.  Cotranscriptionally formed DNA:RNA hybrids mediate transcription elongation impairment and transcription-associated recombination.

Authors:  Pablo Huertas; Andrés Aguilera
Journal:  Mol Cell       Date:  2003-09       Impact factor: 17.970

3.  BRCA1/BARD1 inhibition of mRNA 3' processing involves targeted degradation of RNA polymerase II.

Authors:  Frida E Kleiman; Foon Wu-Baer; Danae Fonseca; Syuzo Kaneko; Richard Baer; James L Manley
Journal:  Genes Dev       Date:  2005-05-15       Impact factor: 11.361

4.  Molecular architecture of the human pre-mRNA 3' processing complex.

Authors:  Yongsheng Shi; Dafne Campigli Di Giammartino; Derek Taylor; Ali Sarkeshik; William J Rice; John R Yates; Joachim Frank; James L Manley
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

5.  Caught in the Act: R-loops are cleaved by structure-specific endonucleases to generate DSBs.

Authors:  Yea-Lih Lin; Philippe Pasero
Journal:  Mol Cell       Date:  2014-12-18       Impact factor: 17.970

Review 6.  How cells get the message: dynamic assembly and function of mRNA-protein complexes.

Authors:  Michaela Müller-McNicoll; Karla M Neugebauer
Journal:  Nat Rev Genet       Date:  2013-03-12       Impact factor: 53.242

7.  Transcription-targeted DNA deamination by the AID antibody diversification enzyme.

Authors:  Jayanta Chaudhuri; Ming Tian; Chan Khuong; Katrin Chua; Eric Pinaud; Frederick W Alt
Journal:  Nature       Date:  2003-04-09       Impact factor: 49.962

Review 8.  Transcription as a source of genome instability.

Authors:  Nayun Kim; Sue Jinks-Robertson
Journal:  Nat Rev Genet       Date:  2012-02-14       Impact factor: 53.242

9.  The homologous recombination machinery modulates the formation of RNA-DNA hybrids and associated chromosome instability.

Authors:  Lamia Wahba; Steven K Gore; Douglas Koshland
Journal:  Elife       Date:  2013-06-11       Impact factor: 8.140

10.  Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5' splice site strength.

Authors:  Vihandha O Wickramasinghe; Mar Gonzàlez-Porta; David Perera; Arthur R Bartolozzi; Christopher R Sibley; Martina Hallegger; Jernej Ule; John C Marioni; Ashok R Venkitaraman
Journal:  Genome Biol       Date:  2015-09-21       Impact factor: 13.583

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  46 in total

Review 1.  Splicing alterations contributing to cancer hallmarks in the liver: central role of dedifferentiation and genome instability.

Authors:  Maddalen Jimenez; María Arechederra; Matías A Ávila; Carmen Berasain
Journal:  Transl Gastroenterol Hepatol       Date:  2018-10-31

2.  ATM directs DNA damage responses and proteostasis via genetically separable pathways.

Authors:  Ji-Hoon Lee; Michael R Mand; Chung-Hsuan Kao; Yi Zhou; Seung W Ryu; Alicia L Richards; Joshua J Coon; Tanya T Paull
Journal:  Sci Signal       Date:  2018-01-09       Impact factor: 8.192

Review 3.  Transcriptional responses to DNA damage.

Authors:  Erica Silva; Trey Ideker
Journal:  DNA Repair (Amst)       Date:  2019-05-07

Review 4.  IT'S 2 for the price of 1: Multifaceted ITS2 processing machines in RNA and DNA maintenance.

Authors:  Monica C Pillon; Yu-Hua Lo; Robin E Stanley
Journal:  DNA Repair (Amst)       Date:  2019-07-08

5.  NELF-E is recruited to DNA double-strand break sites to promote transcriptional repression and repair.

Authors:  Samah W Awwad; Enas R Abu-Zhayia; Noga Guttmann-Raviv; Nabieh Ayoub
Journal:  EMBO Rep       Date:  2017-03-23       Impact factor: 8.807

6.  A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery.

Authors:  Kevin Drew; Chanjae Lee; Rachael M Cox; Vy Dang; Caitlin C Devitt; Claire D McWhite; Ophelia Papoulas; Ryan L Huizar; Edward M Marcotte; John B Wallingford
Journal:  Dev Biol       Date:  2020-09-06       Impact factor: 3.582

Review 7.  Transcription-associated events affecting genomic integrity.

Authors:  Robin Sebastian; Philipp Oberdoerffer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-10-05       Impact factor: 6.237

8.  PARP-1-dependent recruitment of cold-inducible RNA-binding protein promotes double-strand break repair and genome stability.

Authors:  Jung-Kuei Chen; Wen-Ling Lin; Zhang Chen; Hung-Wen Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

9.  Sae2/CtIP prevents R-loop accumulation in eukaryotic cells.

Authors:  Sucheta Arora; Yizhi Yin; Nodar Makharashvili; Qiong Fu; Xuemei Wen; Ji-Hoon Lee; Chung-Hsuan Kao; Justin Wc Leung; Kyle M Miller; Tanya T Paull
Journal:  Elife       Date:  2018-12-07       Impact factor: 8.140

10.  Canonical DNA Repair Pathways Influence R-Loop-Driven Genome Instability.

Authors:  Peter C Stirling; Philip Hieter
Journal:  J Mol Biol       Date:  2016-07-22       Impact factor: 5.469

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