Literature DB >> 31102970

Transcriptional responses to DNA damage.

Erica Silva1, Trey Ideker2.   

Abstract

In response to the threat of DNA damage, cells exhibit a dramatic and multi-factorial response spanning from transcriptional changes to protein modifications, collectively known as the DNA damage response (DDR). Here, we review the literature surrounding the transcriptional response to DNA damage. We review differences in observed transcriptional responses as a function of cell cycle stage and emphasize the importance of experimental design in these transcriptional response studies. We additionally consider topics including structural challenges in the transcriptional response to DNA damage as well as the connection between transcription and protein abundance.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Year:  2019        PMID: 31102970      PMCID: PMC6570417          DOI: 10.1016/j.dnarep.2019.05.002

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  132 in total

Review 1.  Topology and control of the cell-cycle-regulated transcriptional circuitry.

Authors:  Steven B Haase; Curt Wittenberg
Journal:  Genetics       Date:  2014-01       Impact factor: 4.562

2.  A replication fork barrier at the 3' end of yeast ribosomal RNA genes.

Authors:  B J Brewer; W L Fangman
Journal:  Cell       Date:  1988-11-18       Impact factor: 41.582

3.  Modulation of cell cycle-specific gene expressions at the onset of S phase arrest contributes to the robust DNA replication checkpoint response in fission yeast.

Authors:  Zhaoqing Chu; Juntao Li; Majid Eshaghi; Xu Peng; R Krishna M Karuturi; Jianhua Liu
Journal:  Mol Biol Cell       Date:  2007-03-01       Impact factor: 4.138

Review 4.  Regulation of DNA double-strand break repair pathway choice.

Authors:  Meena Shrivastav; Leyma P De Haro; Jac A Nickoloff
Journal:  Cell Res       Date:  2008-01       Impact factor: 25.617

5.  High-resolution transcription atlas of the mitotic cell cycle in budding yeast.

Authors:  Marina V Granovskaia; Lars J Jensen; Matthew E Ritchie; Joern Toedling; Ye Ning; Peer Bork; Wolfgang Huber; Lars M Steinmetz
Journal:  Genome Biol       Date:  2010-03-01       Impact factor: 13.583

6.  The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor.

Authors:  M Huang; Z Zhou; S J Elledge
Journal:  Cell       Date:  1998-09-04       Impact factor: 41.582

7.  A central role for DNA replication forks in checkpoint activation and response.

Authors:  José Antonio Tercero; Maria Pia Longhese; John F X Diffley
Journal:  Mol Cell       Date:  2003-05       Impact factor: 17.970

Review 8.  The DNA damage response and cancer therapy.

Authors:  Christopher J Lord; Alan Ashworth
Journal:  Nature       Date:  2012-01-18       Impact factor: 49.962

9.  Posttranscriptional regulation of gene expression-adding another layer of complexity to the DNA damage response.

Authors:  Jorge Boucas; Arina Riabinska; Mladen Jokic; Grit S Herter-Sprie; Shuhua Chen; Katja Höpker; H Christian Reinhardt
Journal:  Front Genet       Date:  2012-08-25       Impact factor: 4.599

10.  Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress.

Authors:  Johnny M Tkach; Askar Yimit; Anna Y Lee; Michael Riffle; Michael Costanzo; Daniel Jaschob; Jason A Hendry; Jiongwen Ou; Jason Moffat; Charles Boone; Trisha N Davis; Corey Nislow; Grant W Brown
Journal:  Nat Cell Biol       Date:  2012-07-29       Impact factor: 28.824

View more
  3 in total

Review 1.  Walking a tightrope: The complex balancing act of R-loops in genome stability.

Authors:  Joshua R Brickner; Jada L Garzon; Karlene A Cimprich
Journal:  Mol Cell       Date:  2022-05-03       Impact factor: 19.328

2.  DNA damage alters EGFR signaling and reprograms cellular response via Mre-11.

Authors:  Yael Volman; Ruth Hefetz; Eithan Galun; Jacob Rachmilewitz
Journal:  Sci Rep       Date:  2022-04-06       Impact factor: 4.379

Review 3.  PARP Power: A Structural Perspective on PARP1, PARP2, and PARP3 in DNA Damage Repair and Nucleosome Remodelling.

Authors:  Lotte van Beek; Éilís McClay; Saleha Patel; Marianne Schimpl; Laura Spagnolo; Taiana Maia de Oliveira
Journal:  Int J Mol Sci       Date:  2021-05-12       Impact factor: 5.923

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.